Hb_007290_070

Information

Type -
Description -
Location Contig7290: 74750-80243
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11570g
description Monodehydroascorbate reductase family protein
nr
ID XP_006381300.1
description Monodehydroascorbate reductase family protein [Populus trichocarpa]
swissprot
ID Q43497
description Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1
trembl
ID A9P7V5
description Monodehydroascorbate reductase family protein OS=Populus trichocarpa GN=POPTR_0006s11570g PE=2 SV=1
Gene Ontology
ID GO:0005623
description monodehydroascorbate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55894: 74675-80320 , PASA_asmbl_55895: 76237-76511 , PASA_asmbl_55896: 79168-79303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007290_070 0.0 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
2 Hb_001499_070 0.0876637448 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
3 Hb_001408_020 0.0925732213 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
4 Hb_083078_010 0.0929296323 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
5 Hb_000477_070 0.0969850351 - - histone h2a, putative [Ricinus communis]
6 Hb_005214_070 0.1010747373 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
7 Hb_187005_010 0.101820143 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
8 Hb_002383_050 0.1061464635 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
9 Hb_013968_010 0.1097657093 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
10 Hb_011188_010 0.1122506683 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
11 Hb_001001_090 0.1139169481 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
12 Hb_000035_490 0.1160719239 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
13 Hb_001514_240 0.1176586175 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_000996_160 0.1181271188 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009078_020 0.1189594037 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
16 Hb_000008_430 0.1223573359 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
17 Hb_005288_050 0.1269978181 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
18 Hb_000649_330 0.1270780835 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
19 Hb_001205_180 0.1272795692 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
20 Hb_001821_060 0.1281195899 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]

Gene co-expression network

sample Hb_007290_070 Hb_007290_070 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_001514_240 Hb_001514_240 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001499_070--Hb_001408_020 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_001408_020--Hb_187005_010 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_011188_010 Hb_011188_010 Hb_000477_070--Hb_011188_010 Hb_002259_220 Hb_002259_220 Hb_000477_070--Hb_002259_220 Hb_027043_010 Hb_027043_010 Hb_000477_070--Hb_027043_010 Hb_002686_410 Hb_002686_410 Hb_000477_070--Hb_002686_410 Hb_000477_070--Hb_002809_160 Hb_001001_090 Hb_001001_090 Hb_005214_070--Hb_001001_090 Hb_003894_060 Hb_003894_060 Hb_005214_070--Hb_003894_060 Hb_000649_330 Hb_000649_330 Hb_005214_070--Hb_000649_330 Hb_001663_130 Hb_001663_130 Hb_005214_070--Hb_001663_130 Hb_000748_110 Hb_000748_110 Hb_005214_070--Hb_000748_110 Hb_187005_010--Hb_000175_270 Hb_187005_010--Hb_001514_240 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.4764 362.351 449.68 201.603 99.0424 57.9325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.897 24.2544 27.3516 245.406 309.535

CAGE analysis