Hb_013968_010

Information

Type -
Description -
Location Contig13968: 11225-22403
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22020g
description POPTRDRAFT_886640; hypothetical protein
nr
ID XP_012073060.1
description PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
swissprot
ID Q5ZJ85
description U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1
trembl
ID A0A067LFQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06604 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10780: 15470-16082 , PASA_asmbl_10781: 16219-16790 , PASA_asmbl_10783: 17900-18159 , PASA_asmbl_10785: 21209-21640 , PASA_asmbl_10786: 21697-22263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013968_010 0.0 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
2 Hb_001821_060 0.0801585859 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
3 Hb_011188_010 0.0873946786 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
4 Hb_002383_050 0.0874835573 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
5 Hb_003226_090 0.0952884441 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
6 Hb_001514_240 0.0990880188 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
7 Hb_004346_040 0.1001400881 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
8 Hb_000594_060 0.1003609169 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
9 Hb_001499_070 0.1010448843 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
10 Hb_002259_220 0.1011791709 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
11 Hb_001865_010 0.1021959302 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
12 Hb_000260_160 0.1022271029 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
13 Hb_004052_110 0.1022964523 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
14 Hb_022425_050 0.106113264 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
15 Hb_000487_370 0.1070081818 - - -
16 Hb_025045_010 0.107581073 - - catalytic, putative [Ricinus communis]
17 Hb_002432_050 0.1078083568 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
18 Hb_000665_070 0.1085667322 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
19 Hb_007290_070 0.1097657093 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
20 Hb_001059_060 0.1103435373 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_013968_010 Hb_013968_010 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_009193_010 Hb_009193_010 Hb_001821_060--Hb_009193_010 Hb_000256_160 Hb_000256_160 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_001821_060--Hb_003226_090 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_007290_070 Hb_007290_070 Hb_002383_050--Hb_007290_070 Hb_000260_160 Hb_000260_160 Hb_002383_050--Hb_000260_160 Hb_001499_070 Hb_001499_070 Hb_002383_050--Hb_001499_070 Hb_000094_150 Hb_000094_150 Hb_002383_050--Hb_000094_150 Hb_002383_050--Hb_001514_240 Hb_003226_090--Hb_000256_160 Hb_000007_410 Hb_000007_410 Hb_003226_090--Hb_000007_410 Hb_004883_020 Hb_004883_020 Hb_003226_090--Hb_004883_020 Hb_002010_090 Hb_002010_090 Hb_003226_090--Hb_002010_090 Hb_000230_530 Hb_000230_530 Hb_003226_090--Hb_000230_530 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001514_240--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_005015_020 Hb_005015_020 Hb_004346_040--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58127 12.0841 17.7846 9.71804 2.12236 1.91399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66119 1.88508 1.33805 9.81816 18.4593

CAGE analysis