Hb_012033_010

Information

Type -
Description -
Location Contig12033: 6154-14887
Sequence    

Annotation

kegg
ID rcu:RCOM_0215910
description histone h1/h5, putative
nr
ID XP_012087736.1
description PREDICTED: histone H1.2-like [Jatropha curcas]
swissprot
ID P26569
description Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
trembl
ID A0A067JX68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25511 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06298: 6173-14823 , PASA_asmbl_06299: 6687-14823 , PASA_asmbl_06300: 13083-13513 , PASA_asmbl_06301: 7916-8355 , PASA_asmbl_06302: 14874-15316
cDNA
(Sanger)
(ID:Location)		 015_O11.ab1: 14099-14823 , 053_G05.ab1: 13901-14800

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012033_010 0.0 - - PREDICTED: histone H1.2-like [Jatropha curcas]
2 Hb_001821_060 0.0726133146 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
3 Hb_004096_220 0.0992473823 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
4 Hb_000256_160 0.1213100746 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
5 Hb_009193_010 0.1234442098 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
6 Hb_013968_010 0.129014521 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_002888_040 0.1311822251 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
8 Hb_005568_050 0.1334006592 - - ascorbate peroxidase [Hevea brasiliensis]
9 Hb_000139_510 0.1353013677 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
10 Hb_002010_090 0.1356741855 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_001307_200 0.1357308264 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
12 Hb_003226_090 0.136012635 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
13 Hb_001496_120 0.1360904669 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
14 Hb_000261_310 0.1365325435 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
15 Hb_010632_010 0.1372063576 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
16 Hb_000574_370 0.1379037388 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
17 Hb_006816_010 0.1403993023 - - conserved hypothetical protein [Ricinus communis]
18 Hb_153257_010 0.1405099462 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
19 Hb_046998_010 0.1414699297 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_000230_530 0.1421377367 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012033_010 Hb_012033_010 Hb_001821_060 Hb_001821_060 Hb_012033_010--Hb_001821_060 Hb_004096_220 Hb_004096_220 Hb_012033_010--Hb_004096_220 Hb_000256_160 Hb_000256_160 Hb_012033_010--Hb_000256_160 Hb_009193_010 Hb_009193_010 Hb_012033_010--Hb_009193_010 Hb_013968_010 Hb_013968_010 Hb_012033_010--Hb_013968_010 Hb_002888_040 Hb_002888_040 Hb_012033_010--Hb_002888_040 Hb_001821_060--Hb_013968_010 Hb_001821_060--Hb_009193_010 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_000066_040 Hb_000066_040 Hb_009193_010--Hb_000066_040 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3932 15.2333 25.4568 16.5278 4.30971 3.47445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52318 1.71214 0.909884 27.9191 32.0893

CAGE analysis