Hb_001821_060

Information

Type -
Description -
Location Contig1821: 54562-60646
Sequence    

Annotation

kegg
ID rcu:RCOM_1297010
description kinase, putative
nr
ID XP_012078821.1
description PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
swissprot
ID Q9C823
description C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana GN=At1g52310 PE=2 SV=1
trembl
ID A0A067KJI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13355 PE=4 SV=1
Gene Ontology
ID GO:0016020
description c-type lectin receptor-like tyrosine-protein kinase at1g52310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17723: 56152-60048 , PASA_asmbl_17724: 54359-60623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_060 0.0 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
2 Hb_012033_010 0.0726133146 - - PREDICTED: histone H1.2-like [Jatropha curcas]
3 Hb_013968_010 0.0801585859 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
4 Hb_009193_010 0.0841647749 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
5 Hb_000256_160 0.0981888276 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
6 Hb_025045_010 0.1051282726 - - catalytic, putative [Ricinus communis]
7 Hb_003226_090 0.1091369231 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
8 Hb_000066_040 0.1111054616 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_011188_010 0.1126299794 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
10 Hb_002010_090 0.115274171 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_002888_040 0.1158246373 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
12 Hb_009078_020 0.1200529303 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_006816_010 0.120423053 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000594_060 0.1231335768 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
15 Hb_000230_530 0.1258909466 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004096_220 0.1262266737 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
17 Hb_001059_060 0.1262936535 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
18 Hb_001484_090 0.1264155994 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_000510_190 0.1265165984 - - glutathione reductase [Hevea brasiliensis]
20 Hb_000487_370 0.1266801861 - - -

Gene co-expression network

sample Hb_001821_060 Hb_001821_060 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_013968_010 Hb_013968_010 Hb_001821_060--Hb_013968_010 Hb_009193_010 Hb_009193_010 Hb_001821_060--Hb_009193_010 Hb_000256_160 Hb_000256_160 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090 Hb_004096_220 Hb_004096_220 Hb_012033_010--Hb_004096_220 Hb_012033_010--Hb_000256_160 Hb_012033_010--Hb_009193_010 Hb_012033_010--Hb_013968_010 Hb_002888_040 Hb_002888_040 Hb_012033_010--Hb_002888_040 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_000066_040 Hb_000066_040 Hb_009193_010--Hb_000066_040 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_007765_130 Hb_007765_130 Hb_025045_010--Hb_007765_130 Hb_025045_010--Hb_002888_040 Hb_000007_410 Hb_000007_410 Hb_003226_090--Hb_000007_410 Hb_004883_020 Hb_004883_020 Hb_003226_090--Hb_004883_020 Hb_003226_090--Hb_002010_090 Hb_000230_530 Hb_000230_530 Hb_003226_090--Hb_000230_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97702 10.5146 15.7269 12.1969 2.74914 2.3455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13457 1.13385 1.08846 12.766 19.4437

CAGE analysis