Hb_003912_080

Information

Type -
Description -
Location Contig3912: 118112-121112
Sequence    

Annotation

kegg
ID rcu:RCOM_0799870
description Protein pim1, putative
nr
ID XP_012077366.1
description PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9RRY8
description Protein pim1, putative OS=Ricinus communis GN=RCOM_0799870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003912_080 0.0 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_002909_100 0.0886062837 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
3 Hb_000230_470 0.0967476336 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
4 Hb_001999_320 0.0967628433 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
5 Hb_004678_010 0.0994179147 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
6 Hb_001948_090 0.10059029 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
7 Hb_002026_030 0.1069446651 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
8 Hb_001141_060 0.1092521655 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
9 Hb_025045_010 0.1168205224 - - catalytic, putative [Ricinus communis]
10 Hb_000635_050 0.1174751733 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
11 Hb_005408_100 0.1192644973 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
12 Hb_003849_160 0.1222764197 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_001514_240 0.1228756357 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_000320_270 0.1229548105 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
15 Hb_002259_220 0.1233710736 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
16 Hb_000196_010 0.1255278143 - - Patellin-5, putative [Ricinus communis]
17 Hb_002686_210 0.1287156391 - - zinc finger protein, putative [Ricinus communis]
18 Hb_029748_020 0.1287508532 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_004052_110 0.1288024447 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
20 Hb_001059_060 0.1298740057 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_003912_080 Hb_003912_080 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_002909_100--Hb_000230_470 Hb_000196_010 Hb_000196_010 Hb_002909_100--Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_002909_100--Hb_009745_010 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120 Hb_000230_470--Hb_005408_100 Hb_000230_470--Hb_000753_120 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_001059_060 Hb_001059_060 Hb_001999_320--Hb_001059_060 Hb_003849_160 Hb_003849_160 Hb_001999_320--Hb_003849_160 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_004678_010--Hb_002026_030 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_002675_080 Hb_002675_080 Hb_004678_010--Hb_002675_080 Hb_001948_090--Hb_001141_060 Hb_001948_090--Hb_000320_270 Hb_001948_090--Hb_000230_470 Hb_001948_090--Hb_005408_100 Hb_001948_090--Hb_000753_120 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_001969_130 Hb_001969_130 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_002026_030--Hb_004052_110 Hb_002026_030--Hb_002675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65643 10.2216 9.81867 10.6456 0.971084 2.18191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.80966 0.343044 0.651788 3.35115 11.1746

CAGE analysis