Hb_001948_090

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1948: 87881-89722
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14540g
description hypothetical protein
nr
ID XP_006383329.1
description hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
swissprot
ID Q84TQ7
description DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1
trembl
ID U5GFQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14540g PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein gai-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19443: 87699-89959
cDNA
(Sanger)
(ID:Location)		 010_F05.ab1: 87699-88230 , 031_M07.ab1: 87701-88473

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_090 0.0 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
2 Hb_001141_060 0.0930774243 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
3 Hb_000320_270 0.0982374326 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
4 Hb_003912_080 0.10059029 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_000230_470 0.1095139418 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
6 Hb_005408_100 0.121934888 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
7 Hb_000753_120 0.1278837508 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
8 Hb_004678_010 0.1285589235 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
9 Hb_002686_210 0.1340465649 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000326_080 0.1398381303 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_001102_200 0.1433404809 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
12 Hb_004907_070 0.1435690885 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_002909_100 0.1450882666 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
14 Hb_006911_020 0.1461007074 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
15 Hb_000103_410 0.1469269404 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
16 Hb_002006_060 0.1481165011 - - PREDICTED: oleosin 1-like [Jatropha curcas]
17 Hb_006717_010 0.1483933421 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
18 Hb_005725_280 0.1515422016 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
19 Hb_002740_100 0.1520687631 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_000556_070 0.1526584898 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]

Gene co-expression network

sample Hb_001948_090 Hb_001948_090 Hb_001141_060 Hb_001141_060 Hb_001948_090--Hb_001141_060 Hb_000320_270 Hb_000320_270 Hb_001948_090--Hb_000320_270 Hb_003912_080 Hb_003912_080 Hb_001948_090--Hb_003912_080 Hb_000230_470 Hb_000230_470 Hb_001948_090--Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_001948_090--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_001948_090--Hb_000753_120 Hb_001141_060--Hb_003912_080 Hb_004678_010 Hb_004678_010 Hb_001141_060--Hb_004678_010 Hb_000035_060 Hb_000035_060 Hb_001141_060--Hb_000035_060 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_001141_060--Hb_000320_270 Hb_000320_270--Hb_005408_100 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_003912_080--Hb_004678_010 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_000230_470--Hb_005408_100 Hb_000230_470--Hb_002909_100 Hb_000230_470--Hb_000753_120 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_005408_100--Hb_002909_100 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_005408_100--Hb_000753_120 Hb_004013_020 Hb_004013_020 Hb_000753_120--Hb_004013_020 Hb_000753_120--Hb_002909_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79093 75.8074 47.5377 63.8636 3.29796 9.83384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48779 0.953661 2.61429 13.1198 64.4529

CAGE analysis