Hb_001141_060

Information

Type -
Description -
Location Contig1141: 69528-73026
Sequence    

Annotation

kegg
ID rcu:RCOM_0911460
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_012069682.1
description PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067KVL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02214 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_060 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
2 Hb_001948_090 0.0930774243 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
3 Hb_003912_080 0.1092521655 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_004678_010 0.1194868503 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
5 Hb_000035_060 0.1260222159 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
6 Hb_172676_010 0.1315529338 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
7 Hb_000320_270 0.1334775204 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
8 Hb_000366_050 0.1380820997 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
9 Hb_000556_070 0.1444082162 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
10 Hb_001386_020 0.1488248083 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004907_070 0.1508238263 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
12 Hb_000635_050 0.15266782 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_000230_470 0.1532632133 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
14 Hb_071072_010 0.1532769869 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000329_790 0.1534388595 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
16 Hb_001514_240 0.1544323575 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
17 Hb_002006_060 0.1555927417 - - PREDICTED: oleosin 1-like [Jatropha curcas]
18 Hb_005539_100 0.1572541365 - - nucleoside transporter, putative [Ricinus communis]
19 Hb_000007_440 0.157282526 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
20 Hb_132840_020 0.1581909488 - - PREDICTED: protein LHY [Jatropha curcas]

Gene co-expression network

sample Hb_001141_060 Hb_001141_060 Hb_001948_090 Hb_001948_090 Hb_001141_060--Hb_001948_090 Hb_003912_080 Hb_003912_080 Hb_001141_060--Hb_003912_080 Hb_004678_010 Hb_004678_010 Hb_001141_060--Hb_004678_010 Hb_000035_060 Hb_000035_060 Hb_001141_060--Hb_000035_060 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_000320_270 Hb_000320_270 Hb_001141_060--Hb_000320_270 Hb_001948_090--Hb_000320_270 Hb_001948_090--Hb_003912_080 Hb_000230_470 Hb_000230_470 Hb_001948_090--Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_001948_090--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_001948_090--Hb_000753_120 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_003912_080--Hb_004678_010 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_004678_010--Hb_002026_030 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_004678_010--Hb_002675_080 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_000320_270--Hb_005408_100 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0958193 1.56236 1.22585 1.04754 0.0554164 0.28408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0265607 0.08359 0.0394587 0.316411 1.31873

CAGE analysis