Hb_004976_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4976: 59237-65726
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012089461.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45581: 60419-60518 , PASA_asmbl_45584: 61608-62650 , PASA_asmbl_45585: 64833-65236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_080 0.0 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
2 Hb_019837_010 0.0969699561 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000594_150 0.0993701357 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
4 Hb_000072_240 0.1071276821 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
5 Hb_004907_070 0.120299082 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
6 Hb_000035_060 0.131456229 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
7 Hb_004525_020 0.1319266042 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
8 Hb_000808_260 0.1319880564 - - hypothetical protein RCOM_1434920 [Ricinus communis]
9 Hb_064293_010 0.13841967 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_003683_200 0.1430304017 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
11 Hb_001405_230 0.1432845206 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
12 Hb_001836_010 0.15285943 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
13 Hb_171168_010 0.1529023094 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_000365_220 0.152978841 - - protein phosphatase-1, putative [Ricinus communis]
15 Hb_000331_220 0.1545554586 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010180_050 0.156579929 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
17 Hb_003106_250 0.1585873131 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
18 Hb_002999_130 0.1589068147 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
19 Hb_000049_290 0.1590005572 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
20 Hb_002110_110 0.1607121429 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004976_080 Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_004976_080--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_004976_080--Hb_000594_150 Hb_000072_240 Hb_000072_240 Hb_004976_080--Hb_000072_240 Hb_004907_070 Hb_004907_070 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_019837_010--Hb_000594_150 Hb_019837_010--Hb_004907_070 Hb_000808_260 Hb_000808_260 Hb_019837_010--Hb_000808_260 Hb_019837_010--Hb_000072_240 Hb_002999_130 Hb_002999_130 Hb_019837_010--Hb_002999_130 Hb_000594_150--Hb_000072_240 Hb_000594_150--Hb_002999_130 Hb_000594_150--Hb_004907_070 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_000072_240--Hb_010180_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_001357_060 Hb_001357_060 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001141_060 Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_000116_330 Hb_000116_330 Hb_004525_020--Hb_000116_330 Hb_000027_100 Hb_000027_100 Hb_004525_020--Hb_000027_100 Hb_003683_200 Hb_003683_200 Hb_004525_020--Hb_003683_200 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_001160_020 Hb_001160_020 Hb_004525_020--Hb_001160_020 Hb_000417_250 Hb_000417_250 Hb_004525_020--Hb_000417_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0423316 2.16289 1.54549 0.583868 0.0181602 0.0491672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0731267 0.0822125 0.0473888 0.573011 2.591

CAGE analysis