Hb_000027_100

Information

Type -
Description -
Location Contig27: 135551-146762
Sequence    

Annotation

kegg
ID vvi:100247375
description probable receptor-like protein kinase At1g67000
nr
ID CAN69599.1
description hypothetical protein VITISV_039936 [Vitis vinifera]
swissprot
ID Q9FID6
description Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1
trembl
ID A5B272
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039936 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28119: 146483-146690 , PASA_asmbl_28120: 135525-136344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_100 0.0 - - hypothetical protein VITISV_039936 [Vitis vinifera]
2 Hb_004525_020 0.1048824611 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
3 Hb_018616_040 0.150029086 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_000116_330 0.1501088737 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_000417_250 0.1575978047 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
6 Hb_001556_020 0.1578198777 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_007951_070 0.1611436152 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_003683_200 0.1622768552 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_000120_870 0.1640544144 rubber biosynthesis Gene Name: CPT6 -
10 Hb_002783_140 0.1676655133 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
11 Hb_029576_100 0.1681728309 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
12 Hb_001754_260 0.1702006329 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
13 Hb_000417_410 0.177294161 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
14 Hb_001160_020 0.1782330252 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
15 Hb_000365_220 0.1786270008 - - protein phosphatase-1, putative [Ricinus communis]
16 Hb_033153_040 0.1788084229 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000680_020 0.1803763912 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002849_120 0.1813847418 - - ferric reductase oxidase [Manihot esculenta]
19 Hb_004767_020 0.1818763479 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
20 Hb_023344_130 0.185347067 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000027_100 Hb_000027_100 Hb_004525_020 Hb_004525_020 Hb_000027_100--Hb_004525_020 Hb_018616_040 Hb_018616_040 Hb_000027_100--Hb_018616_040 Hb_000116_330 Hb_000116_330 Hb_000027_100--Hb_000116_330 Hb_000417_250 Hb_000417_250 Hb_000027_100--Hb_000417_250 Hb_001556_020 Hb_001556_020 Hb_000027_100--Hb_001556_020 Hb_007951_070 Hb_007951_070 Hb_000027_100--Hb_007951_070 Hb_004525_020--Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_004525_020--Hb_003683_200 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_001160_020 Hb_001160_020 Hb_004525_020--Hb_001160_020 Hb_004525_020--Hb_000417_250 Hb_018616_040--Hb_007951_070 Hb_018616_040--Hb_004525_020 Hb_004920_110 Hb_004920_110 Hb_018616_040--Hb_004920_110 Hb_000847_020 Hb_000847_020 Hb_018616_040--Hb_000847_020 Hb_000760_080 Hb_000760_080 Hb_018616_040--Hb_000760_080 Hb_000116_330--Hb_003683_200 Hb_000116_330--Hb_000417_250 Hb_000116_330--Hb_001160_020 Hb_000680_020 Hb_000680_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_029576_100 Hb_029576_100 Hb_000417_250--Hb_029576_100 Hb_013786_010 Hb_013786_010 Hb_000417_250--Hb_013786_010 Hb_000417_250--Hb_000261_370 Hb_000417_250--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_000417_250--Hb_127661_010 Hb_000417_410 Hb_000417_410 Hb_001556_020--Hb_000417_410 Hb_000453_280 Hb_000453_280 Hb_001556_020--Hb_000453_280 Hb_000522_010 Hb_000522_010 Hb_001556_020--Hb_000522_010 Hb_002783_140 Hb_002783_140 Hb_001556_020--Hb_002783_140 Hb_003517_100 Hb_003517_100 Hb_001556_020--Hb_003517_100 Hb_000120_870 Hb_000120_870 Hb_007951_070--Hb_000120_870 Hb_007237_010 Hb_007237_010 Hb_007951_070--Hb_007237_010 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04618 0.668742 0.254132 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0483257 0.0380278 0.12103 0.553373 0.782825

CAGE analysis