Hb_000453_280

Information

Type -
Description -
Location Contig453: 197011-200945
Sequence    

Annotation

kegg
ID rcu:RCOM_0784710
description negative cofactor 2 transcriptional co-repressor, putative
nr
ID XP_002523220.1
description negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB51
description Negative cofactor 2 transcriptional co-repressor, putative OS=Ricinus communis GN=RCOM_0784710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dr1-associated corepressor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43288: 200340-200833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_280 0.0 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
2 Hb_001556_020 0.1445178078 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_001386_020 0.150045556 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002383_050 0.153335897 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
5 Hb_000175_270 0.165865566 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_000753_140 0.1680920988 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
7 Hb_000808_260 0.1686712205 - - hypothetical protein RCOM_1434920 [Ricinus communis]
8 Hb_187005_010 0.1694092295 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
9 Hb_002768_080 0.1703679203 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_002804_010 0.1737736279 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
11 Hb_000027_140 0.1756605929 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
12 Hb_000086_640 0.1763278439 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_001404_090 0.1777052579 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
14 Hb_132840_020 0.1805885129 - - PREDICTED: protein LHY [Jatropha curcas]
15 Hb_002639_130 0.1820728948 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
16 Hb_000027_130 0.1827098389 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_000318_410 0.1840078222 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
18 Hb_017914_010 0.1842697992 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
19 Hb_004117_270 0.18483304 - - -
20 Hb_001230_030 0.1849815735 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000453_280 Hb_000453_280 Hb_001556_020 Hb_001556_020 Hb_000453_280--Hb_001556_020 Hb_001386_020 Hb_001386_020 Hb_000453_280--Hb_001386_020 Hb_002383_050 Hb_002383_050 Hb_000453_280--Hb_002383_050 Hb_000175_270 Hb_000175_270 Hb_000453_280--Hb_000175_270 Hb_000753_140 Hb_000753_140 Hb_000453_280--Hb_000753_140 Hb_000808_260 Hb_000808_260 Hb_000453_280--Hb_000808_260 Hb_000417_410 Hb_000417_410 Hb_001556_020--Hb_000417_410 Hb_000522_010 Hb_000522_010 Hb_001556_020--Hb_000522_010 Hb_002783_140 Hb_002783_140 Hb_001556_020--Hb_002783_140 Hb_003517_100 Hb_003517_100 Hb_001556_020--Hb_003517_100 Hb_000027_100 Hb_000027_100 Hb_001556_020--Hb_000027_100 Hb_000086_640 Hb_000086_640 Hb_001386_020--Hb_000086_640 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001386_020--Hb_000035_490 Hb_001386_020--Hb_002383_050 Hb_011381_070 Hb_011381_070 Hb_001386_020--Hb_011381_070 Hb_013968_010 Hb_013968_010 Hb_002383_050--Hb_013968_010 Hb_007290_070 Hb_007290_070 Hb_002383_050--Hb_007290_070 Hb_000260_160 Hb_000260_160 Hb_002383_050--Hb_000260_160 Hb_001499_070 Hb_001499_070 Hb_002383_050--Hb_001499_070 Hb_000094_150 Hb_000094_150 Hb_002383_050--Hb_000094_150 Hb_001514_240 Hb_001514_240 Hb_002383_050--Hb_001514_240 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_000318_410 Hb_000318_410 Hb_000753_140--Hb_000318_410 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_000753_140--Hb_000086_640 Hb_015807_080 Hb_015807_080 Hb_000753_140--Hb_015807_080 Hb_000753_140--Hb_132840_020 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42615 7.72517 4.9608 1.68089 0.543848 0.133378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2134 0.74992 0.0632269 2.44683 4.78186

CAGE analysis