Hb_019837_010

Information

Type -
Description -
Location Contig19837: 14587-16384
Sequence    

Annotation

kegg
ID rcu:RCOM_0649730
description hypothetical protein
nr
ID XP_002523266.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB97
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19912: 14774-16314 , PASA_asmbl_19913: 14540-15627
cDNA
(Sanger)
(ID:Location)		 016_P14.ab1: 14540-15627

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019837_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004976_080 0.0969699561 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_000594_150 0.107455429 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
4 Hb_004907_070 0.1133391132 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
5 Hb_000808_260 0.1321760818 - - hypothetical protein RCOM_1434920 [Ricinus communis]
6 Hb_000072_240 0.1343039354 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
7 Hb_002999_130 0.1352995702 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
8 Hb_002999_140 0.137433213 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_000035_060 0.1380955205 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
10 Hb_005999_020 0.1391615231 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
11 Hb_004525_020 0.1486959113 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
12 Hb_001369_020 0.1515229328 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
13 Hb_002835_280 0.1550743824 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
14 Hb_006570_060 0.157599821 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
15 Hb_073171_050 0.1576841245 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
16 Hb_000272_030 0.1612294462 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
17 Hb_064293_010 0.1624493403 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_002783_140 0.1636701492 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
19 Hb_000107_090 0.1656694365 - - PREDICTED: kinesin KP1 [Jatropha curcas]
20 Hb_000365_220 0.1660318217 - - protein phosphatase-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_019837_010 Hb_019837_010 Hb_004976_080 Hb_004976_080 Hb_019837_010--Hb_004976_080 Hb_000594_150 Hb_000594_150 Hb_019837_010--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_019837_010--Hb_004907_070 Hb_000808_260 Hb_000808_260 Hb_019837_010--Hb_000808_260 Hb_000072_240 Hb_000072_240 Hb_019837_010--Hb_000072_240 Hb_002999_130 Hb_002999_130 Hb_019837_010--Hb_002999_130 Hb_004976_080--Hb_000594_150 Hb_004976_080--Hb_000072_240 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_000594_150--Hb_000072_240 Hb_000594_150--Hb_002999_130 Hb_000594_150--Hb_004907_070 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_001357_060 Hb_001357_060 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_000808_260--Hb_004976_080 Hb_000808_260--Hb_000594_150 Hb_000808_260--Hb_004907_070 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_000072_240--Hb_010180_050 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0721908 4.20598 3.86994 2.03574 0 0.130035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206141 0.421595 0.180862 1.05256 5.29819

CAGE analysis