Hb_000594_150

Information

Type -
Description -
Location Contig594: 191808-198846
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11560g
description POPTRDRAFT_832716; kinase family protein
nr
ID XP_010265255.1
description PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
swissprot
ID Q9S713
description Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1
trembl
ID B9HIY8
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0008s11560g PE=3 SV=1
Gene Ontology
ID GO:0016772
description serine threonine-protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50341: 195702-196282 , PASA_asmbl_50342: 196571-197179 , PASA_asmbl_50343: 191932-197190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_150 0.0 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
2 Hb_000072_240 0.0879462157 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_004976_080 0.0993701357 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_019837_010 0.107455429 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002999_130 0.1085265283 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
6 Hb_004907_070 0.116928016 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
7 Hb_010180_050 0.1176770844 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
8 Hb_064293_010 0.1293969183 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000808_260 0.1342358742 - - hypothetical protein RCOM_1434920 [Ricinus communis]
10 Hb_002211_020 0.1406137514 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
11 Hb_010904_010 0.1420359098 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
12 Hb_000049_290 0.144494063 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_073171_050 0.1529265151 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
14 Hb_003970_010 0.1535500541 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
15 Hb_000656_260 0.1542257776 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
16 Hb_003125_080 0.1549437146 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
17 Hb_183025_010 0.1570308403 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_002783_140 0.1583528592 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
19 Hb_003126_010 0.1600458671 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
20 Hb_004108_120 0.1601994687 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_150 Hb_000594_150 Hb_000072_240 Hb_000072_240 Hb_000594_150--Hb_000072_240 Hb_004976_080 Hb_004976_080 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_002999_130 Hb_002999_130 Hb_000594_150--Hb_002999_130 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050 Hb_000072_240--Hb_004976_080 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_000072_240--Hb_010180_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_004976_080--Hb_019837_010 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_019837_010--Hb_004907_070 Hb_000808_260 Hb_000808_260 Hb_019837_010--Hb_000808_260 Hb_019837_010--Hb_000072_240 Hb_019837_010--Hb_002999_130 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_001357_060 Hb_001357_060 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164609 10.7707 9.37305 3.86538 0.0601486 0.0837706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.541606 0.439932 0 1.68681 12.3349

CAGE analysis