Hb_003106_240

Information

Type -
Description -
Location Contig3106: 167126-168459
Sequence    

Annotation

kegg
ID rcu:RCOM_1511980
description hypothetical protein
nr
ID XP_006376838.1
description hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07880g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32909: 167123-168461
cDNA
(Sanger)
(ID:Location)		 003_L15.ab1: 167250-168461 , 018_M15.ab1: 167306-168461 , 020_G08.ab1: 167253-168461 , 034_L09.ab1: 167256-168461

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_240 0.0 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
2 Hb_011457_080 0.1102046226 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
3 Hb_004218_080 0.1273093876 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
4 Hb_010180_050 0.1297871113 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
5 Hb_027402_100 0.1323211161 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
6 Hb_000035_060 0.1348695535 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
7 Hb_007193_030 0.1382296408 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
8 Hb_000318_410 0.1588844783 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
9 Hb_005054_320 0.159328522 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
10 Hb_002997_110 0.1600884257 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
11 Hb_110252_010 0.1624768671 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
12 Hb_004907_070 0.1635198354 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_000156_080 0.1647235808 - - Potassium channel KAT2, putative [Ricinus communis]
14 Hb_012814_030 0.1653447711 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
15 Hb_003579_010 0.166085963 - - cryptochrome 1.2 [Populus tremula]
16 Hb_001369_020 0.167992356 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
17 Hb_001386_020 0.1683301731 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000556_070 0.1696757977 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
19 Hb_183025_010 0.16994898 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
20 Hb_002999_130 0.1704846189 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]

Gene co-expression network

sample Hb_003106_240 Hb_003106_240 Hb_011457_080 Hb_011457_080 Hb_003106_240--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_003106_240--Hb_004218_080 Hb_010180_050 Hb_010180_050 Hb_003106_240--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_003106_240--Hb_027402_100 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_007193_030 Hb_007193_030 Hb_003106_240--Hb_007193_030 Hb_000156_080 Hb_000156_080 Hb_011457_080--Hb_000156_080 Hb_011457_080--Hb_010180_050 Hb_011457_080--Hb_027402_100 Hb_028285_020 Hb_028285_020 Hb_011457_080--Hb_028285_020 Hb_011457_080--Hb_004218_080 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_000072_240 Hb_000072_240 Hb_010180_050--Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_010180_050--Hb_000594_150 Hb_002999_130 Hb_002999_130 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_132840_090 Hb_132840_090 Hb_027402_100--Hb_132840_090 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001141_060 Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0013 155.88 112.013 48.5928 5.77696 5.54446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72922 2.11912 3.72455 9.05874 114.63

CAGE analysis