Hb_000365_340

Information

Type -
Description -
Location Contig365: 316067-322686
Sequence    

Annotation

kegg
ID rcu:RCOM_0126450
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID XP_012090993.1
description PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067JPA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00622 PE=4 SV=1
Gene Ontology
ID GO:0016740
description bromodomain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37603: 317974-319472 , PASA_asmbl_37604: 322305-322627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_340 0.0 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
2 Hb_005694_150 0.1050831492 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
3 Hb_000892_030 0.1072483244 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_000567_110 0.1199615997 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
5 Hb_050847_030 0.122256 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
6 Hb_012799_040 0.1249173932 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
7 Hb_004218_080 0.1264971529 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
8 Hb_007193_030 0.1280516923 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
9 Hb_005725_280 0.1294313296 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
10 Hb_002725_080 0.1314973095 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_004724_300 0.134543695 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
12 Hb_007007_030 0.1350658134 - - conserved hypothetical protein [Ricinus communis]
13 Hb_094437_050 0.1355812171 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
14 Hb_002849_110 0.1362624808 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
15 Hb_000047_010 0.138018688 - - PREDICTED: expansin-like A1 [Jatropha curcas]
16 Hb_002498_250 0.1434886172 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_004112_050 0.1435242904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_001254_020 0.1440476872 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
19 Hb_000032_090 0.1443589703 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002010_080 0.1465322275 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_340 Hb_000365_340 Hb_005694_150 Hb_005694_150 Hb_000365_340--Hb_005694_150 Hb_000892_030 Hb_000892_030 Hb_000365_340--Hb_000892_030 Hb_000567_110 Hb_000567_110 Hb_000365_340--Hb_000567_110 Hb_050847_030 Hb_050847_030 Hb_000365_340--Hb_050847_030 Hb_012799_040 Hb_012799_040 Hb_000365_340--Hb_012799_040 Hb_004218_080 Hb_004218_080 Hb_000365_340--Hb_004218_080 Hb_005694_150--Hb_050847_030 Hb_000375_150 Hb_000375_150 Hb_005694_150--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_005694_150--Hb_000325_070 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_005694_150--Hb_000892_030 Hb_000047_010 Hb_000047_010 Hb_000892_030--Hb_000047_010 Hb_094437_050 Hb_094437_050 Hb_000892_030--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_000892_030--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_000892_030--Hb_002400_040 Hb_000024_020 Hb_000024_020 Hb_000567_110--Hb_000024_020 Hb_006573_280 Hb_006573_280 Hb_000567_110--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_000567_110--Hb_004724_300 Hb_003633_150 Hb_003633_150 Hb_000567_110--Hb_003633_150 Hb_004112_050 Hb_004112_050 Hb_000567_110--Hb_004112_050 Hb_000567_110--Hb_005694_150 Hb_050847_030--Hb_000375_150 Hb_050847_030--Hb_000325_070 Hb_050847_030--Hb_000892_030 Hb_002004_010 Hb_002004_010 Hb_050847_030--Hb_002004_010 Hb_000656_260 Hb_000656_260 Hb_012799_040--Hb_000656_260 Hb_000032_090 Hb_000032_090 Hb_012799_040--Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_012799_040--Hb_004393_030 Hb_036492_020 Hb_036492_020 Hb_012799_040--Hb_036492_020 Hb_001660_130 Hb_001660_130 Hb_012799_040--Hb_001660_130 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110 Hb_007193_030 Hb_007193_030 Hb_004218_080--Hb_007193_030 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0516155 2.17889 1.21384 1.38651 0.0419436 0.0376156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0195346 0 0.0877318 0.122165 0.880227

CAGE analysis