Hb_007193_030

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig7193: 46822-54935
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09480g
description POPTRDRAFT_414287; hypothetical protein
nr
ID XP_012081065.1
description PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
swissprot
ID Q336N8
description Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica GN=JMJ706 PE=2 SV=1
trembl
ID A0A067K2E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17120 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lysine-specific demethylase jmj706-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55552: 46863-55103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007193_030 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
2 Hb_004218_080 0.0673319883 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
3 Hb_001369_020 0.0943953065 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
4 Hb_001623_410 0.0979504911 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
5 Hb_073171_050 0.0995623415 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
6 Hb_005725_280 0.1140686126 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
7 Hb_003905_040 0.1185391832 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
8 Hb_012799_040 0.1207068643 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_000365_340 0.1280516923 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
10 Hb_028285_020 0.1298994337 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
11 Hb_000156_080 0.1312183282 - - Potassium channel KAT2, putative [Ricinus communis]
12 Hb_132840_020 0.1317841219 - - PREDICTED: protein LHY [Jatropha curcas]
13 Hb_054232_020 0.1326229169 - - Potassium channel SKOR, putative [Ricinus communis]
14 Hb_000318_410 0.1331069501 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
15 Hb_005080_020 0.1338145975 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
16 Hb_001357_060 0.1363157071 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
17 Hb_001294_050 0.1368903642 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_002498_250 0.1380027574 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_003106_240 0.1382296408 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
20 Hb_000086_620 0.1384935298 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007193_030 Hb_007193_030 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_001369_020--Hb_073171_050 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410 Hb_001369_020--Hb_003905_040 Hb_000086_620 Hb_000086_620 Hb_001623_410--Hb_000086_620 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_001623_410--Hb_073171_050 Hb_001623_410--Hb_005080_020 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_002999_130 Hb_002999_130 Hb_073171_050--Hb_002999_130 Hb_073171_050--Hb_028285_020 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_005725_280--Hb_002498_250 Hb_149484_010 Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425091 23.8797 16.8431 9.77068 0.89435 0.640468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.604507 0.496852 0.971793 2.25065 11.4048

CAGE analysis