Hb_002783_140

Information

Type -
Description -
Location Contig2783: 162593-168218
Sequence    

Annotation

kegg
ID rcu:RCOM_1598180
description hypothetical protein
nr
ID XP_012073787.1
description PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08205 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29047: 162619-163954 , PASA_asmbl_29048: 163955-166141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_140 0.0 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
2 Hb_001357_060 0.1063955389 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
3 Hb_002890_320 0.1143806601 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
4 Hb_033153_040 0.1146697538 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_005569_030 0.1150666912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
6 Hb_003387_080 0.1172908132 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_073171_050 0.1178334179 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
8 Hb_003905_040 0.1181730572 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
9 Hb_004837_110 0.1197319932 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
10 Hb_001538_050 0.1215634295 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
11 Hb_012098_180 0.1217925326 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
12 Hb_004907_070 0.1228781639 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_000260_480 0.1238641887 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
14 Hb_002849_120 0.1287499586 - - ferric reductase oxidase [Manihot esculenta]
15 Hb_028285_020 0.1302498565 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
16 Hb_002809_120 0.1312593094 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
17 Hb_007483_080 0.1313552785 - - hypothetical protein RCOM_0634810 [Ricinus communis]
18 Hb_001369_020 0.1326268725 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
19 Hb_000313_100 0.1326486448 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
20 Hb_005463_070 0.1338171726 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_140 Hb_002783_140 Hb_001357_060 Hb_001357_060 Hb_002783_140--Hb_001357_060 Hb_002890_320 Hb_002890_320 Hb_002783_140--Hb_002890_320 Hb_033153_040 Hb_033153_040 Hb_002783_140--Hb_033153_040 Hb_005569_030 Hb_005569_030 Hb_002783_140--Hb_005569_030 Hb_003387_080 Hb_003387_080 Hb_002783_140--Hb_003387_080 Hb_073171_050 Hb_073171_050 Hb_002783_140--Hb_073171_050 Hb_002809_120 Hb_002809_120 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_003905_040 Hb_003905_040 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_004837_110 Hb_004837_110 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_002849_120 Hb_002849_120 Hb_033153_040--Hb_002849_120 Hb_033153_040--Hb_005569_030 Hb_000680_020 Hb_000680_020 Hb_033153_040--Hb_000680_020 Hb_003077_140 Hb_003077_140 Hb_033153_040--Hb_003077_140 Hb_033153_040--Hb_000313_100 Hb_001153_090 Hb_001153_090 Hb_033153_040--Hb_001153_090 Hb_005569_030--Hb_000313_100 Hb_175670_010 Hb_175670_010 Hb_005569_030--Hb_175670_010 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_000318_050 Hb_000318_050 Hb_003387_080--Hb_000318_050 Hb_005016_080 Hb_005016_080 Hb_003387_080--Hb_005016_080 Hb_003387_080--Hb_002849_120 Hb_005463_070 Hb_005463_070 Hb_003387_080--Hb_005463_070 Hb_001160_020 Hb_001160_020 Hb_003387_080--Hb_001160_020 Hb_006269_010 Hb_006269_010 Hb_003387_080--Hb_006269_010 Hb_001369_020 Hb_001369_020 Hb_073171_050--Hb_001369_020 Hb_002999_130 Hb_002999_130 Hb_073171_050--Hb_002999_130 Hb_007193_030 Hb_007193_030 Hb_073171_050--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104428 20.5975 13.2686 7.72965 0.0162915 0.0647935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.494057 0.419855 0.11831 5.93893 11.804

CAGE analysis