Hb_001623_410

Information

Type -
Description -
Location Contig1623: 309766-312552
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07340g
description POPTRDRAFT_229995; hypothetical protein
nr
ID XP_012077650.1
description PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIR6
description Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067KM53
description Beta-amylase OS=Jatropha curcas GN=JCGZ_12909 PE=3 SV=1
Gene Ontology
ID GO:0005634
description beta-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14720: 309761-312571 , PASA_asmbl_14721: 311081-312549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_410 0.0 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
2 Hb_000086_620 0.0902948485 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
3 Hb_007193_030 0.0979504911 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
4 Hb_000985_140 0.1075173538 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
5 Hb_073171_050 0.1095265677 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
6 Hb_005080_020 0.1127447762 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_003078_070 0.1138763551 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
8 Hb_001369_020 0.1160494797 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
9 Hb_002498_250 0.12816894 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_001660_130 0.1296172479 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
11 Hb_009476_110 0.1305494271 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
12 Hb_004218_080 0.1307248288 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
13 Hb_001247_160 0.1332452394 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
14 Hb_132840_020 0.1359642025 - - PREDICTED: protein LHY [Jatropha curcas]
15 Hb_003905_040 0.1362897205 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
16 Hb_000071_090 0.1364399567 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
17 Hb_021254_020 0.1374661056 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_011930_120 0.1387536129 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
19 Hb_000454_080 0.1397643009 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
20 Hb_000984_290 0.1402743707 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_410 Hb_001623_410 Hb_000086_620 Hb_000086_620 Hb_001623_410--Hb_000086_620 Hb_007193_030 Hb_007193_030 Hb_001623_410--Hb_007193_030 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_073171_050 Hb_073171_050 Hb_001623_410--Hb_073171_050 Hb_005080_020 Hb_005080_020 Hb_001623_410--Hb_005080_020 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_007193_030--Hb_073171_050 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_000985_140--Hb_003078_070 Hb_021254_020 Hb_021254_020 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000032_090 Hb_000032_090 Hb_000985_140--Hb_000032_090 Hb_000071_090 Hb_000071_090 Hb_000985_140--Hb_000071_090 Hb_073171_050--Hb_001369_020 Hb_002999_130 Hb_002999_130 Hb_073171_050--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_048476_040 Hb_048476_040 Hb_005080_020--Hb_048476_040 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_003078_070--Hb_021254_020 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.36077 249.965 199.567 93.6018 2.0892 5.80932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25633 5.5725 11.0219 26.0927 72.2648

CAGE analysis