Hb_021254_020

Information

Type -
Description -
Location Contig21254: 10072-12890
Sequence    

Annotation

kegg
ID rcu:RCOM_0705990
description calmodulin binding protein, putative
nr
ID XP_002516086.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR7
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0705990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22018: 9902-13064
cDNA
(Sanger)
(ID:Location)		 030_D13.ab1: 11808-12606

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021254_020 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_004393_030 0.0696730754 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
3 Hb_004109_240 0.0706620167 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
4 Hb_008810_030 0.0771022369 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
5 Hb_003078_070 0.0864899118 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
6 Hb_000985_140 0.0881225115 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
7 Hb_001660_130 0.0915624935 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
8 Hb_001247_160 0.0951688848 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
9 Hb_028486_010 0.1003429944 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_000172_410 0.1015454161 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_004899_360 0.101593525 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_000032_090 0.1071228931 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004112_050 0.1085681569 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_000836_420 0.1125001391 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000087_200 0.1125452357 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
16 Hb_134022_010 0.1148047117 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_007007_030 0.1154530134 - - conserved hypothetical protein [Ricinus communis]
18 Hb_121540_010 0.1203340477 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
19 Hb_008202_020 0.1218080612 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_002936_030 0.1265919394 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021254_020 Hb_021254_020 Hb_004393_030 Hb_004393_030 Hb_021254_020--Hb_004393_030 Hb_004109_240 Hb_004109_240 Hb_021254_020--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_021254_020--Hb_008810_030 Hb_003078_070 Hb_003078_070 Hb_021254_020--Hb_003078_070 Hb_000985_140 Hb_000985_140 Hb_021254_020--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_021254_020--Hb_001660_130 Hb_004393_030--Hb_008810_030 Hb_000032_090 Hb_000032_090 Hb_004393_030--Hb_000032_090 Hb_004393_030--Hb_000985_140 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_000087_200 Hb_000087_200 Hb_004109_240--Hb_000087_200 Hb_028486_010 Hb_028486_010 Hb_004109_240--Hb_028486_010 Hb_004899_360 Hb_004899_360 Hb_004109_240--Hb_004899_360 Hb_008202_020 Hb_008202_020 Hb_004109_240--Hb_008202_020 Hb_121540_010 Hb_121540_010 Hb_004109_240--Hb_121540_010 Hb_134022_010 Hb_134022_010 Hb_008810_030--Hb_134022_010 Hb_008810_030--Hb_004899_360 Hb_008810_030--Hb_000032_090 Hb_008810_030--Hb_004109_240 Hb_003078_070--Hb_000985_140 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000985_140--Hb_000032_090 Hb_000985_140--Hb_000071_090 Hb_002783_130 Hb_002783_130 Hb_001660_130--Hb_002783_130 Hb_000402_180 Hb_000402_180 Hb_001660_130--Hb_000402_180 Hb_001660_130--Hb_008810_030 Hb_012799_040 Hb_012799_040 Hb_001660_130--Hb_012799_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157617 38.6742 26.7933 16.106 0.0650419 0.0971315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128687 0.10125 0.19135 2.73441 7.80253

CAGE analysis