Hb_007007_030

Information

Type -
Description -
Location Contig7007: 11257-19179
Sequence    

Annotation

kegg
ID rcu:RCOM_1613500
description hypothetical protein
nr
ID XP_002511779.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93ZQ5
description SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2
trembl
ID B9RDJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613500 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx domain-containing membrane protein at4g22990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54819: 11534-12203 , PASA_asmbl_54820: 12337-13184 , PASA_asmbl_54821: 13208-13409 , PASA_asmbl_54822: 13450-14035 , PASA_asmbl_54823: 14044-14333 , PASA_asmbl_54824: 17012-19138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004393_030 0.0953978563 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
3 Hb_004112_050 0.0957339348 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000032_090 0.1005471513 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001254_020 0.1099976109 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
6 Hb_000985_140 0.1100402514 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
7 Hb_004724_300 0.1140358198 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
8 Hb_008810_030 0.1149153508 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
9 Hb_021254_020 0.1154530134 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_002725_080 0.1160020817 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_134022_010 0.1179163784 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_001610_070 0.1202605122 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
13 Hb_012799_040 0.1245925001 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
14 Hb_007102_010 0.1254030448 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
15 Hb_001247_160 0.1280347178 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
16 Hb_000054_140 0.1293514884 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
17 Hb_000418_060 0.1295931098 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
18 Hb_001821_050 0.131241198 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
19 Hb_004837_110 0.1324427654 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
20 Hb_000365_340 0.1350658134 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]

Gene co-expression network

sample Hb_007007_030 Hb_007007_030 Hb_004393_030 Hb_004393_030 Hb_007007_030--Hb_004393_030 Hb_004112_050 Hb_004112_050 Hb_007007_030--Hb_004112_050 Hb_000032_090 Hb_000032_090 Hb_007007_030--Hb_000032_090 Hb_001254_020 Hb_001254_020 Hb_007007_030--Hb_001254_020 Hb_000985_140 Hb_000985_140 Hb_007007_030--Hb_000985_140 Hb_004724_300 Hb_004724_300 Hb_007007_030--Hb_004724_300 Hb_008810_030 Hb_008810_030 Hb_004393_030--Hb_008810_030 Hb_021254_020 Hb_021254_020 Hb_004393_030--Hb_021254_020 Hb_004393_030--Hb_000032_090 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_001310_080 Hb_001310_080 Hb_004112_050--Hb_001310_080 Hb_004112_050--Hb_004724_300 Hb_002218_080 Hb_002218_080 Hb_004112_050--Hb_002218_080 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_113396_010 Hb_113396_010 Hb_004112_050--Hb_113396_010 Hb_000032_090--Hb_001254_020 Hb_002374_030 Hb_002374_030 Hb_000032_090--Hb_002374_030 Hb_000032_090--Hb_008810_030 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_000418_060 Hb_000418_060 Hb_001254_020--Hb_000418_060 Hb_001254_020--Hb_004393_030 Hb_000071_090 Hb_000071_090 Hb_001254_020--Hb_000071_090 Hb_001610_070 Hb_001610_070 Hb_001254_020--Hb_001610_070 Hb_003078_070 Hb_003078_070 Hb_000985_140--Hb_003078_070 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000985_140--Hb_000071_090 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_007102_010 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.24657 2.1582 1.90955 0.0183863 0.0167924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104281 0 0 0.267511 1.11206

CAGE analysis