Hb_002218_080

Information

Type -
Description -
Location Contig2218: 102506-105311
Sequence    

Annotation

kegg
ID tcc:TCM_026270
description Ankyrin repeat family protein, putative
nr
ID XP_007030509.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A061F1T7
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_026270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_080 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_002110_050 0.0632328985 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001310_080 0.0659155911 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
4 Hb_113396_010 0.0758274068 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002548_020 0.0847569865 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
6 Hb_000024_020 0.086032738 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
7 Hb_004112_050 0.0936725328 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_004241_100 0.0972127073 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
9 Hb_160576_010 0.1005505133 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_134022_010 0.1031027001 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_026048_030 0.1055265496 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008948_110 0.1083948398 - - PREDICTED: peroxidase 25 [Jatropha curcas]
13 Hb_001104_270 0.1095872891 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
14 Hb_000060_100 0.1115282505 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_004724_300 0.1138438631 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_006002_020 0.1170827906 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
17 Hb_002725_080 0.1185598999 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_096930_010 0.1203782618 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
19 Hb_001518_030 0.1234947871 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_001956_160 0.124751815 - - hypothetical protein L484_009438 [Morus notabilis]

Gene co-expression network

sample Hb_002218_080 Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_002218_080--Hb_002110_050 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_002548_020 Hb_002548_020 Hb_002218_080--Hb_002548_020 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_002218_080--Hb_004112_050 Hb_002110_050--Hb_002548_020 Hb_004241_100 Hb_004241_100 Hb_002110_050--Hb_004241_100 Hb_160576_010 Hb_160576_010 Hb_002110_050--Hb_160576_010 Hb_000032_230 Hb_000032_230 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_001310_080--Hb_113396_010 Hb_026048_030 Hb_026048_030 Hb_001310_080--Hb_026048_030 Hb_001310_080--Hb_004112_050 Hb_001310_080--Hb_000024_020 Hb_001518_030 Hb_001518_030 Hb_001310_080--Hb_001518_030 Hb_113396_010--Hb_026048_030 Hb_000365_190 Hb_000365_190 Hb_113396_010--Hb_000365_190 Hb_113396_010--Hb_000024_020 Hb_113396_010--Hb_004112_050 Hb_002548_020--Hb_004241_100 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200 Hb_002548_020--Hb_160576_010 Hb_007441_150 Hb_007441_150 Hb_000024_020--Hb_007441_150 Hb_000567_110 Hb_000567_110 Hb_000024_020--Hb_000567_110 Hb_000024_020--Hb_004112_050 Hb_004724_300 Hb_004724_300 Hb_004112_050--Hb_004724_300 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73677 0.720812 0.950868 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0398219 0.336962

CAGE analysis