Hb_000032_230

Information

Type transcription factor
Description TF Family: ERF
Location Contig32: 194743-195663
Sequence    

Annotation

kegg
ID rcu:RCOM_1691830
description DNA binding protein, putative
nr
ID KDP25307.1
description hypothetical protein JCGZ_20463 [Jatropha curcas]
swissprot
ID Q9C7W2
description Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1
trembl
ID A0A067JN59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20463 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf061

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_230 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
2 Hb_160576_010 0.0924120013 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_000780_110 0.0945694848 - - cation-transporting atpase plant, putative [Ricinus communis]
4 Hb_002110_050 0.0970127061 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001956_160 0.1057754264 - - hypothetical protein L484_009438 [Morus notabilis]
6 Hb_004241_100 0.1145015659 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
7 Hb_002548_020 0.1186265625 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_032260_100 0.1219609546 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
9 Hb_007441_150 0.1264934927 - - Ankyrin repeat family protein [Theobroma cacao]
10 Hb_008948_110 0.1267668894 - - PREDICTED: peroxidase 25 [Jatropha curcas]
11 Hb_005656_200 0.1271417697 - - Cation transport protein chaC, putative [Ricinus communis]
12 Hb_000060_100 0.1301062102 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_002218_080 0.1313014286 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_005694_150 0.1349036984 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_029622_080 0.1354866492 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
16 Hb_090306_010 0.136656726 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
17 Hb_000988_020 0.1380084236 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
18 Hb_000024_020 0.139615602 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_134022_010 0.1399631493 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_006907_020 0.1417119081 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]

Gene co-expression network

sample Hb_000032_230 Hb_000032_230 Hb_160576_010 Hb_160576_010 Hb_000032_230--Hb_160576_010 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_002110_050 Hb_002110_050 Hb_000032_230--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_004241_100 Hb_004241_100 Hb_000032_230--Hb_004241_100 Hb_002548_020 Hb_002548_020 Hb_000032_230--Hb_002548_020 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_002110_050 Hb_002218_080 Hb_002218_080 Hb_160576_010--Hb_002218_080 Hb_160576_010--Hb_001956_160 Hb_160576_010--Hb_002548_020 Hb_000780_110--Hb_002110_050 Hb_000780_110--Hb_004241_100 Hb_008948_110 Hb_008948_110 Hb_000780_110--Hb_008948_110 Hb_005694_150 Hb_005694_150 Hb_000780_110--Hb_005694_150 Hb_000780_110--Hb_160576_010 Hb_002110_050--Hb_002548_020 Hb_002110_050--Hb_002218_080 Hb_002110_050--Hb_004241_100 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_001956_160--Hb_008948_110 Hb_001956_160--Hb_000060_100 Hb_032260_100 Hb_032260_100 Hb_001956_160--Hb_032260_100 Hb_001956_160--Hb_002110_050 Hb_004241_100--Hb_002548_020 Hb_004241_100--Hb_002218_080 Hb_155015_020 Hb_155015_020 Hb_004241_100--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_004241_100--Hb_002811_320 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27536 172.966 65.5729 58.0955 0.679157 1.12859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899301 0.795643 0.0808935 0.285019 30.9125

CAGE analysis