Hb_000780_110

Information

Type -
Description -
Location Contig780: 104620-107673
Sequence    

Annotation

kegg
ID rcu:RCOM_0483240
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002531689.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID B9T0C0
description Cation-transporting atpase plant, putative OS=Ricinus communis GN=RCOM_0483240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57918: 104992-105201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_110 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_000032_230 0.0945694848 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
3 Hb_002110_050 0.1253753563 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004241_100 0.1278924482 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
5 Hb_008948_110 0.1284062054 - - PREDICTED: peroxidase 25 [Jatropha curcas]
6 Hb_005694_150 0.1311070074 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
7 Hb_160576_010 0.1421744976 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_002218_080 0.1452602236 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_050847_030 0.1458421761 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
10 Hb_134022_010 0.1465059634 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_004112_050 0.1474171952 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_000325_070 0.1493097037 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_004724_300 0.1502191722 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
14 Hb_002498_250 0.1510141234 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_003375_080 0.1517817281 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
16 Hb_002548_020 0.1526050259 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_002234_200 0.1528154016 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
18 Hb_000060_100 0.1529955989 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_004647_010 0.1556913463 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000024_020 0.1566791898 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]

Gene co-expression network

sample Hb_000780_110 Hb_000780_110 Hb_000032_230 Hb_000032_230 Hb_000780_110--Hb_000032_230 Hb_002110_050 Hb_002110_050 Hb_000780_110--Hb_002110_050 Hb_004241_100 Hb_004241_100 Hb_000780_110--Hb_004241_100 Hb_008948_110 Hb_008948_110 Hb_000780_110--Hb_008948_110 Hb_005694_150 Hb_005694_150 Hb_000780_110--Hb_005694_150 Hb_160576_010 Hb_160576_010 Hb_000780_110--Hb_160576_010 Hb_000032_230--Hb_160576_010 Hb_000032_230--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_000032_230--Hb_004241_100 Hb_002548_020 Hb_002548_020 Hb_000032_230--Hb_002548_020 Hb_002110_050--Hb_002548_020 Hb_002218_080 Hb_002218_080 Hb_002110_050--Hb_002218_080 Hb_002110_050--Hb_004241_100 Hb_002110_050--Hb_160576_010 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_004241_100--Hb_002548_020 Hb_004241_100--Hb_002218_080 Hb_155015_020 Hb_155015_020 Hb_004241_100--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_004241_100--Hb_002811_320 Hb_004112_050 Hb_004112_050 Hb_008948_110--Hb_004112_050 Hb_008948_110--Hb_001956_160 Hb_008948_110--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_008948_110--Hb_001310_080 Hb_002234_200 Hb_002234_200 Hb_008948_110--Hb_002234_200 Hb_008948_110--Hb_005694_150 Hb_050847_030 Hb_050847_030 Hb_005694_150--Hb_050847_030 Hb_000375_150 Hb_000375_150 Hb_005694_150--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_005694_150--Hb_000325_070 Hb_000365_340 Hb_000365_340 Hb_005694_150--Hb_000365_340 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_000892_030 Hb_000892_030 Hb_005694_150--Hb_000892_030 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_002218_080 Hb_160576_010--Hb_001956_160 Hb_160576_010--Hb_002548_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439681 1.30645 0.519449 0.497467 0 0.027431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0142422 0 0 0.0133344 0.287041

CAGE analysis