Hb_002811_320

Information

Type -
Description -
Location Contig2811: 262713-265751
Sequence    

Annotation

kegg
ID rcu:RCOM_1427470
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002512213.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID B9REP4
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1427470 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_320 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_155015_020 0.0244063843 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
3 Hb_001198_170 0.0694726197 - - -
4 Hb_001257_120 0.090234925 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
5 Hb_005946_200 0.0918668269 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
6 Hb_112145_010 0.1001581711 - - kinase, putative [Ricinus communis]
7 Hb_004241_100 0.1120669783 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
8 Hb_172240_010 0.1123416448 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
9 Hb_006153_020 0.1123874369 - - vacuolar invertase [Manihot esculenta]
10 Hb_026048_030 0.1137539353 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000201_070 0.1163118151 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
12 Hb_006002_020 0.1192063001 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
13 Hb_002186_030 0.1221596163 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
14 Hb_001518_030 0.1248554553 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_000127_200 0.1253280947 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
16 Hb_002548_020 0.1268130312 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_002303_050 0.1269371779 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
18 Hb_002218_080 0.1299919075 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_000358_170 0.1325481647 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
20 Hb_001221_050 0.1325576796 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_320 Hb_002811_320 Hb_155015_020 Hb_155015_020 Hb_002811_320--Hb_155015_020 Hb_001198_170 Hb_001198_170 Hb_002811_320--Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_002811_320--Hb_001257_120 Hb_005946_200 Hb_005946_200 Hb_002811_320--Hb_005946_200 Hb_112145_010 Hb_112145_010 Hb_002811_320--Hb_112145_010 Hb_004241_100 Hb_004241_100 Hb_002811_320--Hb_004241_100 Hb_155015_020--Hb_001198_170 Hb_155015_020--Hb_001257_120 Hb_155015_020--Hb_112145_010 Hb_172240_010 Hb_172240_010 Hb_155015_020--Hb_172240_010 Hb_000201_070 Hb_000201_070 Hb_155015_020--Hb_000201_070 Hb_001198_170--Hb_001257_120 Hb_000127_200 Hb_000127_200 Hb_001198_170--Hb_000127_200 Hb_000358_170 Hb_000358_170 Hb_001198_170--Hb_000358_170 Hb_002548_020 Hb_002548_020 Hb_001198_170--Hb_002548_020 Hb_001257_120--Hb_000358_170 Hb_001257_120--Hb_172240_010 Hb_098175_010 Hb_098175_010 Hb_001257_120--Hb_098175_010 Hb_001221_050 Hb_001221_050 Hb_005946_200--Hb_001221_050 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_002804_070 Hb_002804_070 Hb_005946_200--Hb_002804_070 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_001022_070 Hb_001022_070 Hb_005946_200--Hb_001022_070 Hb_002170_010 Hb_002170_010 Hb_112145_010--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_112145_010--Hb_128216_010 Hb_112145_010--Hb_002303_050 Hb_006951_010 Hb_006951_010 Hb_112145_010--Hb_006951_010 Hb_002110_050 Hb_002110_050 Hb_004241_100--Hb_002110_050 Hb_004241_100--Hb_002548_020 Hb_002218_080 Hb_002218_080 Hb_004241_100--Hb_002218_080 Hb_004241_100--Hb_155015_020 Hb_000032_230 Hb_000032_230 Hb_004241_100--Hb_000032_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.26209 0.12273 0.253401 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0480883

CAGE analysis