Hb_001257_120

Information

Type -
Description -
Location Contig1257: 156501-157331
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21070g
description CCR4-NOT transcription complex family protein
nr
ID XP_012084581.1
description PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
swissprot
ID Q9LXM2
description Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1
trembl
ID A0A067JTU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20215 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07853: 157023-157270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_120 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
2 Hb_001198_170 0.06846729 - - -
3 Hb_000358_170 0.0768547998 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
4 Hb_172240_010 0.0820578899 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
5 Hb_002811_320 0.090234925 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_155015_020 0.0914616023 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_098175_010 0.1079549341 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_000127_200 0.110202073 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
9 Hb_010369_010 0.1144235348 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003071_040 0.115340499 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
11 Hb_004241_100 0.1218303393 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
12 Hb_001213_140 0.1287581295 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_000827_090 0.1319784108 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
14 Hb_000777_020 0.1324502163 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
15 Hb_000201_070 0.1325312882 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
16 Hb_000925_110 0.1377078202 - - Spotted leaf protein, putative [Ricinus communis]
17 Hb_000731_020 0.1385534239 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
18 Hb_026048_030 0.139327273 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003209_120 0.1407502261 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_096930_010 0.1424402596 - - hypothetical protein JCGZ_27059 [Jatropha curcas]

Gene co-expression network

sample Hb_001257_120 Hb_001257_120 Hb_001198_170 Hb_001198_170 Hb_001257_120--Hb_001198_170 Hb_000358_170 Hb_000358_170 Hb_001257_120--Hb_000358_170 Hb_172240_010 Hb_172240_010 Hb_001257_120--Hb_172240_010 Hb_002811_320 Hb_002811_320 Hb_001257_120--Hb_002811_320 Hb_155015_020 Hb_155015_020 Hb_001257_120--Hb_155015_020 Hb_098175_010 Hb_098175_010 Hb_001257_120--Hb_098175_010 Hb_001198_170--Hb_002811_320 Hb_001198_170--Hb_155015_020 Hb_000127_200 Hb_000127_200 Hb_001198_170--Hb_000127_200 Hb_001198_170--Hb_000358_170 Hb_002548_020 Hb_002548_020 Hb_001198_170--Hb_002548_020 Hb_000358_170--Hb_000127_200 Hb_010369_010 Hb_010369_010 Hb_000358_170--Hb_010369_010 Hb_003209_120 Hb_003209_120 Hb_000358_170--Hb_003209_120 Hb_004079_040 Hb_004079_040 Hb_000358_170--Hb_004079_040 Hb_172240_010--Hb_098175_010 Hb_172240_010--Hb_155015_020 Hb_003071_040 Hb_003071_040 Hb_172240_010--Hb_003071_040 Hb_000201_070 Hb_000201_070 Hb_172240_010--Hb_000201_070 Hb_172240_010--Hb_002811_320 Hb_002811_320--Hb_155015_020 Hb_005946_200 Hb_005946_200 Hb_002811_320--Hb_005946_200 Hb_112145_010 Hb_112145_010 Hb_002811_320--Hb_112145_010 Hb_004241_100 Hb_004241_100 Hb_002811_320--Hb_004241_100 Hb_155015_020--Hb_112145_010 Hb_155015_020--Hb_000201_070 Hb_098175_010--Hb_003071_040 Hb_011429_010 Hb_011429_010 Hb_098175_010--Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_098175_010--Hb_000769_030 Hb_010573_030 Hb_010573_030 Hb_098175_010--Hb_010573_030 Hb_003602_080 Hb_003602_080 Hb_098175_010--Hb_003602_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168124 190.663 73.3491 151.551 0 0.199165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.449303 0.605663 0.0916084 0.326449 15.2536

CAGE analysis