Hb_010573_030

Information

Type -
Description -
Location Contig10573: 40533-40796
Sequence    

Annotation

kegg
ID rcu:RCOM_0373660
description hypothetical protein
nr
ID XP_002532075.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1F7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0373660 PE=4 SV=1
Gene Ontology
ID GO:0001101
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010573_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007728_010 0.0645886986 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_002422_020 0.0675245216 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_137612_010 0.0733028361 - - cytochrome P450, putative [Ricinus communis]
5 Hb_013591_010 0.0737378955 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
6 Hb_000134_010 0.0808724129 - - -
7 Hb_094839_010 0.085948763 - - conserved hypothetical protein [Ricinus communis]
8 Hb_165552_020 0.0929326011 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000417_230 0.0931953011 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010012_020 0.0958821356 - - conserved hypothetical protein [Ricinus communis]
11 Hb_098175_010 0.1011964186 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_003674_010 0.1013865324 - - purine transporter, putative [Ricinus communis]
13 Hb_003071_040 0.1017827474 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
14 Hb_003602_080 0.1092499995 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
15 Hb_041534_010 0.1133531733 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
16 Hb_011429_010 0.1166035986 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
17 Hb_002107_080 0.116667932 - - JHL20J20.3 [Jatropha curcas]
18 Hb_073973_180 0.11729845 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
19 Hb_019978_010 0.123605565 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
20 Hb_000028_360 0.1237120982 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010573_030 Hb_010573_030 Hb_007728_010 Hb_007728_010 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_000134_010 Hb_000134_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_007728_010--Hb_137612_010 Hb_007728_010--Hb_000134_010 Hb_007728_010--Hb_002422_020 Hb_007728_010--Hb_013591_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020 Hb_002422_020--Hb_013591_010 Hb_002422_020--Hb_137612_010 Hb_041534_010 Hb_041534_010 Hb_002422_020--Hb_041534_010 Hb_064692_010 Hb_064692_010 Hb_002422_020--Hb_064692_010 Hb_137612_010--Hb_013591_010 Hb_137612_010--Hb_000134_010 Hb_137612_010--Hb_041534_010 Hb_137612_010--Hb_064692_010 Hb_013591_010--Hb_064692_010 Hb_013591_010--Hb_041534_010 Hb_025477_030 Hb_025477_030 Hb_000134_010--Hb_025477_030 Hb_000134_010--Hb_094839_010 Hb_167802_010 Hb_167802_010 Hb_000134_010--Hb_167802_010 Hb_000417_230 Hb_000417_230 Hb_094839_010--Hb_000417_230 Hb_073973_180 Hb_073973_180 Hb_094839_010--Hb_073973_180 Hb_002107_080 Hb_002107_080 Hb_094839_010--Hb_002107_080 Hb_094839_010--Hb_007728_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.792837 1310.91 191.464 650.033 0.237634 0.68272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530128 2.09708 0 1.37342 4.76491

CAGE analysis