Hb_025477_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig25477: 42561-43265
Sequence    

Annotation

kegg
ID rcu:RCOM_1497560
description Dehydration-responsive element-binding protein 1A, putative
nr
ID AFA50332.1
description dehydration-responsive element-binding protein 2 [Manihot esculenta]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID V9INN3
description Dehydration-responsive element-binding protein 2 OS=Manihot esculenta GN=DREB2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description c-repeat dehydration-responsive element-binding factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26595: 42471-43707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_030 0.0 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
2 Hb_009393_010 0.070163848 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
3 Hb_002475_110 0.0723128501 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
4 Hb_013726_100 0.0743796047 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_167802_010 0.0805262008 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_000134_010 0.0850363761 - - -
7 Hb_000904_090 0.0945224072 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
8 Hb_009683_060 0.0966707735 - - -
9 Hb_000256_050 0.1013018214 - - chitinase, putative [Ricinus communis]
10 Hb_010417_120 0.1053633522 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000227_410 0.1059518714 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
12 Hb_027214_060 0.1059613901 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
13 Hb_001623_020 0.1062022075 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_000610_030 0.1098905651 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
15 Hb_009707_010 0.1161026375 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
16 Hb_094839_010 0.1165320155 - - conserved hypothetical protein [Ricinus communis]
17 Hb_104855_020 0.1212418995 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_025477_020 0.1238046679 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
19 Hb_114932_010 0.124772172 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_011805_060 0.1249182234 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_025477_030 Hb_025477_030 Hb_009393_010 Hb_009393_010 Hb_025477_030--Hb_009393_010 Hb_002475_110 Hb_002475_110 Hb_025477_030--Hb_002475_110 Hb_013726_100 Hb_013726_100 Hb_025477_030--Hb_013726_100 Hb_167802_010 Hb_167802_010 Hb_025477_030--Hb_167802_010 Hb_000134_010 Hb_000134_010 Hb_025477_030--Hb_000134_010 Hb_000904_090 Hb_000904_090 Hb_025477_030--Hb_000904_090 Hb_009393_010--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_009393_010--Hb_000256_050 Hb_009393_010--Hb_167802_010 Hb_009393_010--Hb_002475_110 Hb_009393_010--Hb_000134_010 Hb_002475_110--Hb_013726_100 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_001623_020 Hb_001623_020 Hb_002475_110--Hb_001623_020 Hb_002475_110--Hb_000904_090 Hb_013726_100--Hb_000256_050 Hb_013726_100--Hb_001623_020 Hb_002572_060 Hb_002572_060 Hb_013726_100--Hb_002572_060 Hb_009683_060 Hb_009683_060 Hb_013726_100--Hb_009683_060 Hb_167802_010--Hb_009683_060 Hb_167802_010--Hb_001623_020 Hb_104855_020 Hb_104855_020 Hb_167802_010--Hb_104855_020 Hb_167802_010--Hb_000904_090 Hb_000338_020 Hb_000338_020 Hb_167802_010--Hb_000338_020 Hb_137612_010 Hb_137612_010 Hb_000134_010--Hb_137612_010 Hb_007728_010 Hb_007728_010 Hb_000134_010--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_000134_010--Hb_010573_030 Hb_094839_010 Hb_094839_010 Hb_000134_010--Hb_094839_010 Hb_000134_010--Hb_167802_010 Hb_000904_090--Hb_000227_410 Hb_000904_090--Hb_009683_060 Hb_000904_090--Hb_104855_020 Hb_048538_010 Hb_048538_010 Hb_000904_090--Hb_048538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104091 113.96 8.4817 25.5902 0 0.13757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240326 0.251909 0.224928 0.0512318 0.62332

CAGE analysis