Hb_009393_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig9393: 5700-6317
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08320g
description POPTRDRAFT_778862; hypothetical protein
nr
ID XP_012077166.1
description PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
swissprot
ID Q84QC2
description Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1
trembl
ID A0A067KNY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07576 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63042: 5332-6368
cDNA
(Sanger)
(ID:Location)		 014_N14.ab1: 5662-6365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
2 Hb_025477_030 0.070163848 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
3 Hb_013726_100 0.086847892 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
4 Hb_000256_050 0.0913560745 - - chitinase, putative [Ricinus communis]
5 Hb_167802_010 0.0953764239 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_002475_110 0.0960617176 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
7 Hb_000134_010 0.0964389995 - - -
8 Hb_170979_010 0.0986654565 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_094839_010 0.1079771116 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007728_010 0.1160851585 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
11 Hb_052530_030 0.1195775409 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
12 Hb_073973_180 0.1196706504 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
13 Hb_092044_010 0.1196818544 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
14 Hb_001623_020 0.1203301481 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
15 Hb_002639_090 0.1208350246 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
16 Hb_009683_060 0.1234127215 - - -
17 Hb_011805_060 0.1300536834 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_000610_030 0.130304127 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
19 Hb_010417_120 0.1308558687 - - conserved hypothetical protein [Ricinus communis]
20 Hb_137612_010 0.1344338957 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_009393_010 Hb_009393_010 Hb_025477_030 Hb_025477_030 Hb_009393_010--Hb_025477_030 Hb_013726_100 Hb_013726_100 Hb_009393_010--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_009393_010--Hb_000256_050 Hb_167802_010 Hb_167802_010 Hb_009393_010--Hb_167802_010 Hb_002475_110 Hb_002475_110 Hb_009393_010--Hb_002475_110 Hb_000134_010 Hb_000134_010 Hb_009393_010--Hb_000134_010 Hb_025477_030--Hb_002475_110 Hb_025477_030--Hb_013726_100 Hb_025477_030--Hb_167802_010 Hb_025477_030--Hb_000134_010 Hb_000904_090 Hb_000904_090 Hb_025477_030--Hb_000904_090 Hb_013726_100--Hb_002475_110 Hb_013726_100--Hb_000256_050 Hb_001623_020 Hb_001623_020 Hb_013726_100--Hb_001623_020 Hb_002572_060 Hb_002572_060 Hb_013726_100--Hb_002572_060 Hb_009683_060 Hb_009683_060 Hb_013726_100--Hb_009683_060 Hb_000256_050--Hb_001623_020 Hb_000256_050--Hb_002475_110 Hb_000256_050--Hb_002572_060 Hb_000256_050--Hb_167802_010 Hb_167802_010--Hb_009683_060 Hb_167802_010--Hb_001623_020 Hb_104855_020 Hb_104855_020 Hb_167802_010--Hb_104855_020 Hb_167802_010--Hb_000904_090 Hb_000338_020 Hb_000338_020 Hb_167802_010--Hb_000338_020 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_002475_110--Hb_001623_020 Hb_002475_110--Hb_000904_090 Hb_137612_010 Hb_137612_010 Hb_000134_010--Hb_137612_010 Hb_007728_010 Hb_007728_010 Hb_000134_010--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_000134_010--Hb_010573_030 Hb_094839_010 Hb_094839_010 Hb_000134_010--Hb_094839_010 Hb_000134_010--Hb_167802_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 517.211 23.8279 138.079 0 0.157652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.151943 0.266879 0.186614 2.06786

CAGE analysis