Hb_000134_010

Information

Type -
Description -
Location Contig134: 7877-11418
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09580: 7613-8135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_010 0.0 - - -
2 Hb_137612_010 0.0651998628 - - cytochrome P450, putative [Ricinus communis]
3 Hb_007728_010 0.0681540651 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
4 Hb_010573_030 0.0808724129 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025477_030 0.0850363761 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
6 Hb_094839_010 0.086565484 - - conserved hypothetical protein [Ricinus communis]
7 Hb_167802_010 0.0878027284 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_002422_020 0.0925299983 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_013591_010 0.0935612251 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
10 Hb_009393_010 0.0964389995 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
11 Hb_041534_010 0.0988060616 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
12 Hb_064692_010 0.104037649 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_002922_010 0.1182435783 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
14 Hb_009683_060 0.1182967525 - - -
15 Hb_073973_180 0.1191670585 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
16 Hb_000417_230 0.122991818 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000338_020 0.1243994836 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_010417_120 0.1249550099 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009707_010 0.1257197384 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_114932_010 0.127007632 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000134_010 Hb_000134_010 Hb_137612_010 Hb_137612_010 Hb_000134_010--Hb_137612_010 Hb_007728_010 Hb_007728_010 Hb_000134_010--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_000134_010--Hb_010573_030 Hb_025477_030 Hb_025477_030 Hb_000134_010--Hb_025477_030 Hb_094839_010 Hb_094839_010 Hb_000134_010--Hb_094839_010 Hb_167802_010 Hb_167802_010 Hb_000134_010--Hb_167802_010 Hb_002422_020 Hb_002422_020 Hb_137612_010--Hb_002422_020 Hb_013591_010 Hb_013591_010 Hb_137612_010--Hb_013591_010 Hb_137612_010--Hb_007728_010 Hb_041534_010 Hb_041534_010 Hb_137612_010--Hb_041534_010 Hb_064692_010 Hb_064692_010 Hb_137612_010--Hb_064692_010 Hb_007728_010--Hb_010573_030 Hb_007728_010--Hb_002422_020 Hb_007728_010--Hb_013591_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020 Hb_010573_030--Hb_002422_020 Hb_010573_030--Hb_137612_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_094839_010 Hb_009393_010 Hb_009393_010 Hb_025477_030--Hb_009393_010 Hb_002475_110 Hb_002475_110 Hb_025477_030--Hb_002475_110 Hb_013726_100 Hb_013726_100 Hb_025477_030--Hb_013726_100 Hb_025477_030--Hb_167802_010 Hb_000904_090 Hb_000904_090 Hb_025477_030--Hb_000904_090 Hb_000417_230 Hb_000417_230 Hb_094839_010--Hb_000417_230 Hb_073973_180 Hb_073973_180 Hb_094839_010--Hb_073973_180 Hb_002107_080 Hb_002107_080 Hb_094839_010--Hb_002107_080 Hb_094839_010--Hb_007728_010 Hb_009683_060 Hb_009683_060 Hb_167802_010--Hb_009683_060 Hb_001623_020 Hb_001623_020 Hb_167802_010--Hb_001623_020 Hb_104855_020 Hb_104855_020 Hb_167802_010--Hb_104855_020 Hb_167802_010--Hb_000904_090 Hb_000338_020 Hb_000338_020 Hb_167802_010--Hb_000338_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.669749 581.796 63.4111 192.645 0.0734274 0.692568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.552624 1.30218 0 0.307659 0.51554

CAGE analysis