Hb_007728_010

Information

Type -
Description -
Location Contig7728: 19932-20665
Sequence    

Annotation

kegg
ID vvi:100261069
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_012067859.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007728_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_137612_010 0.051980029 - - cytochrome P450, putative [Ricinus communis]
3 Hb_010573_030 0.0645886986 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000134_010 0.0681540651 - - -
5 Hb_002422_020 0.0701965374 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
6 Hb_013591_010 0.0763231401 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
7 Hb_165552_020 0.0875079672 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_094839_010 0.0949672871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_092044_010 0.1106287544 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
10 Hb_041534_010 0.1120119273 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
11 Hb_009393_010 0.1160851585 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
12 Hb_003674_010 0.118407331 - - purine transporter, putative [Ricinus communis]
13 Hb_064692_010 0.1185201092 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_167802_010 0.1187306935 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_073973_180 0.1192518371 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
16 Hb_000417_230 0.120168855 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010012_020 0.1206612941 - - conserved hypothetical protein [Ricinus communis]
18 Hb_170979_010 0.1220715531 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
19 Hb_002420_030 0.1297790332 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_011609_060 0.1304372474 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]

Gene co-expression network

sample Hb_007728_010 Hb_007728_010 Hb_137612_010 Hb_137612_010 Hb_007728_010--Hb_137612_010 Hb_010573_030 Hb_010573_030 Hb_007728_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_007728_010--Hb_000134_010 Hb_002422_020 Hb_002422_020 Hb_007728_010--Hb_002422_020 Hb_013591_010 Hb_013591_010 Hb_007728_010--Hb_013591_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020 Hb_137612_010--Hb_002422_020 Hb_137612_010--Hb_013591_010 Hb_137612_010--Hb_000134_010 Hb_041534_010 Hb_041534_010 Hb_137612_010--Hb_041534_010 Hb_064692_010 Hb_064692_010 Hb_137612_010--Hb_064692_010 Hb_010573_030--Hb_002422_020 Hb_010573_030--Hb_137612_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_025477_030 Hb_025477_030 Hb_000134_010--Hb_025477_030 Hb_000134_010--Hb_094839_010 Hb_167802_010 Hb_167802_010 Hb_000134_010--Hb_167802_010 Hb_002422_020--Hb_013591_010 Hb_002422_020--Hb_041534_010 Hb_002422_020--Hb_064692_010 Hb_013591_010--Hb_064692_010 Hb_013591_010--Hb_041534_010 Hb_005040_010 Hb_005040_010 Hb_165552_020--Hb_005040_010 Hb_002420_030 Hb_002420_030 Hb_165552_020--Hb_002420_030 Hb_165552_020--Hb_010573_030 Hb_011609_060 Hb_011609_060 Hb_165552_020--Hb_011609_060 Hb_010012_020 Hb_010012_020 Hb_165552_020--Hb_010012_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.284655 0.0303798 0.121273 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis