Hb_010012_020

Information

Type -
Description -
Location Contig10012: 16431-18091
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010012_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003674_010 0.0858380606 - - purine transporter, putative [Ricinus communis]
3 Hb_003602_080 0.0879815361 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
4 Hb_002420_030 0.0906566909 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_010573_030 0.0958821356 - - conserved hypothetical protein [Ricinus communis]
6 Hb_165552_020 0.0981657907 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_011429_010 0.1125197037 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
8 Hb_039410_010 0.1189975205 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_002422_020 0.1195153838 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_098175_010 0.119760646 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_007728_010 0.1206612941 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_009697_010 0.1250071645 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000769_030 0.1253809352 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_013591_010 0.1259018868 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
15 Hb_043115_010 0.1324783692 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
16 Hb_137612_010 0.1352467244 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002107_080 0.1362849054 - - JHL20J20.3 [Jatropha curcas]
18 Hb_000417_230 0.1382672033 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000203_090 0.1427013433 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
20 Hb_005040_010 0.144337143 - - hypothetical protein RCOM_1110360 [Ricinus communis]

Gene co-expression network

sample Hb_010012_020 Hb_010012_020 Hb_003674_010 Hb_003674_010 Hb_010012_020--Hb_003674_010 Hb_003602_080 Hb_003602_080 Hb_010012_020--Hb_003602_080 Hb_002420_030 Hb_002420_030 Hb_010012_020--Hb_002420_030 Hb_010573_030 Hb_010573_030 Hb_010012_020--Hb_010573_030 Hb_165552_020 Hb_165552_020 Hb_010012_020--Hb_165552_020 Hb_011429_010 Hb_011429_010 Hb_010012_020--Hb_011429_010 Hb_002422_020 Hb_002422_020 Hb_003674_010--Hb_002422_020 Hb_013591_010 Hb_013591_010 Hb_003674_010--Hb_013591_010 Hb_003674_010--Hb_011429_010 Hb_003674_010--Hb_010573_030 Hb_003674_010--Hb_002420_030 Hb_003602_080--Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_003602_080--Hb_000769_030 Hb_039410_010 Hb_039410_010 Hb_003602_080--Hb_039410_010 Hb_003602_080--Hb_165552_020 Hb_098175_010 Hb_098175_010 Hb_003602_080--Hb_098175_010 Hb_002420_030--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_002420_030--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_002420_030--Hb_001957_050 Hb_002420_030--Hb_039410_010 Hb_007728_010 Hb_007728_010 Hb_010573_030--Hb_007728_010 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_010573_030--Hb_013591_010 Hb_000134_010 Hb_000134_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_165552_020--Hb_005040_010 Hb_165552_020--Hb_007728_010 Hb_165552_020--Hb_010573_030 Hb_011609_060 Hb_011609_060 Hb_165552_020--Hb_011609_060 Hb_011429_010--Hb_000769_030 Hb_004724_290 Hb_004724_290 Hb_011429_010--Hb_004724_290 Hb_011429_010--Hb_098175_010 Hb_128460_020 Hb_128460_020 Hb_011429_010--Hb_128460_020 Hb_010369_010 Hb_010369_010 Hb_011429_010--Hb_010369_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.414784 47.095 7.6311 31.2445 0.452415 0.183992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0515083 0 0 0

CAGE analysis