Hb_128460_020

Information

Type -
Description -
Location Contig128460: 1943-4177
Sequence    

Annotation

kegg
ID sot:102578493
description probable leucine-rich repeat receptor-like protein kinase At1g35710-like
nr
ID XP_009618938.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID G7L9I5
description Receptor-like protein, putative OS=Medicago truncatula GN=MTR_8g088970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128460_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
2 Hb_014361_140 0.0239730067 - - PREDICTED: peroxidase 51 [Jatropha curcas]
3 Hb_053935_010 0.0250580754 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
4 Hb_000061_060 0.0321898865 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
5 Hb_000373_220 0.0492972832 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_004241_190 0.0558878692 - - -
7 Hb_158110_010 0.0631331223 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
8 Hb_000769_030 0.0656811327 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_010369_010 0.0819276401 - - conserved hypothetical protein [Ricinus communis]
10 Hb_104855_010 0.0861876925 - - -
11 Hb_011429_010 0.0892373602 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
12 Hb_000668_220 0.0962450253 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
13 Hb_000628_050 0.1011895819 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_173029_010 0.1080804399 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004724_290 0.1082335069 transcription factor TF Family: NAC -
16 Hb_182625_010 0.1136311072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
17 Hb_000203_090 0.1150135141 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
18 Hb_005773_010 0.1155280854 - - -
19 Hb_011671_360 0.1180639932 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
20 Hb_006916_220 0.1229750484 - - hypothetical protein JCGZ_20099 [Jatropha curcas]

Gene co-expression network

sample Hb_128460_020 Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_128460_020--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_128460_020--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_128460_020--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_128460_020--Hb_000373_220 Hb_004241_190 Hb_004241_190 Hb_128460_020--Hb_004241_190 Hb_158110_010 Hb_158110_010 Hb_128460_020--Hb_158110_010 Hb_014361_140--Hb_000061_060 Hb_014361_140--Hb_053935_010 Hb_104855_010 Hb_104855_010 Hb_014361_140--Hb_104855_010 Hb_014361_140--Hb_158110_010 Hb_014361_140--Hb_004241_190 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_004241_190 Hb_053935_010--Hb_000061_060 Hb_053935_010--Hb_158110_010 Hb_000061_060--Hb_004241_190 Hb_000061_060--Hb_104855_010 Hb_000061_060--Hb_158110_010 Hb_000373_220--Hb_004241_190 Hb_000668_220 Hb_000668_220 Hb_000373_220--Hb_000668_220 Hb_000373_220--Hb_000061_060 Hb_000373_220--Hb_014361_140 Hb_000628_050 Hb_000628_050 Hb_004241_190--Hb_000628_050 Hb_173029_010 Hb_173029_010 Hb_004241_190--Hb_173029_010 Hb_158110_010--Hb_004241_190 Hb_158110_010--Hb_000373_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.414934 0.213826 0.413223 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis