Hb_000668_220

Information

Type -
Description -
Location Contig668: 162572-163525
Sequence    

Annotation

kegg
ID rcu:RCOM_1033430
description hypothetical protein
nr
ID XP_011015707.1
description PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RJE9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_220 0.0 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
2 Hb_173029_010 0.0367329554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_004241_190 0.0559201897 - - -
4 Hb_000373_220 0.058625187 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_053935_010 0.0717243383 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
6 Hb_001511_200 0.0852928789 - - Embryonic abundant protein, putative [Ricinus communis]
7 Hb_000628_050 0.0855890169 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000061_060 0.0959075684 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
9 Hb_128460_020 0.0962450253 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
10 Hb_000904_110 0.0973910365 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
11 Hb_116103_010 0.1029279415 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
12 Hb_004924_020 0.1046055135 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_158110_010 0.1126277803 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
14 Hb_014361_140 0.1158261231 - - PREDICTED: peroxidase 51 [Jatropha curcas]
15 Hb_000714_080 0.117384947 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
16 Hb_064885_010 0.1180503214 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_128851_020 0.1191706773 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_008963_010 0.1208607931 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
19 Hb_006916_220 0.1210945644 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
20 Hb_007546_010 0.1230171359 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000668_220 Hb_000668_220 Hb_173029_010 Hb_173029_010 Hb_000668_220--Hb_173029_010 Hb_004241_190 Hb_004241_190 Hb_000668_220--Hb_004241_190 Hb_000373_220 Hb_000373_220 Hb_000668_220--Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_000628_050 Hb_000628_050 Hb_000668_220--Hb_000628_050 Hb_173029_010--Hb_004241_190 Hb_173029_010--Hb_000628_050 Hb_173029_010--Hb_000373_220 Hb_173029_010--Hb_053935_010 Hb_000904_110 Hb_000904_110 Hb_173029_010--Hb_000904_110 Hb_004241_190--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_004241_190--Hb_000061_060 Hb_004241_190--Hb_000373_220 Hb_004241_190--Hb_000628_050 Hb_128460_020 Hb_128460_020 Hb_004241_190--Hb_128460_020 Hb_000373_220--Hb_053935_010 Hb_000373_220--Hb_128460_020 Hb_000373_220--Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_000373_220--Hb_014361_140 Hb_053935_010--Hb_128460_020 Hb_053935_010--Hb_000061_060 Hb_053935_010--Hb_014361_140 Hb_158110_010 Hb_158110_010 Hb_053935_010--Hb_158110_010 Hb_128851_020 Hb_128851_020 Hb_001511_200--Hb_128851_020 Hb_001677_140 Hb_001677_140 Hb_001511_200--Hb_001677_140 Hb_010136_020 Hb_010136_020 Hb_001511_200--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001511_200--Hb_002006_110 Hb_099188_010 Hb_099188_010 Hb_001511_200--Hb_099188_010 Hb_005773_010 Hb_005773_010 Hb_000628_050--Hb_005773_010 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_053935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0706574 0.0527422 0.0562 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis