Hb_000628_050

Information

Type -
Description -
Location Contig628: 95663-96867
Sequence    

Annotation

kegg
ID fve:101297906
description putative ribonuclease H protein At1g65750-like
nr
ID XP_002512046.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID B9REA7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1619780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_050 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004241_190 0.0529340571 - - -
3 Hb_173029_010 0.0575742084 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005773_010 0.0618049164 - - -
5 Hb_000061_060 0.0745493746 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
6 Hb_000668_220 0.0855890169 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
7 Hb_053935_010 0.0916347192 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
8 Hb_000072_010 0.0928204077 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
9 Hb_104855_010 0.0952407195 - - -
10 Hb_160950_010 0.0963988638 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
11 Hb_136973_020 0.0986464857 - - -
12 Hb_005928_010 0.0995683192 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
13 Hb_128460_020 0.1011895819 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
14 Hb_137349_010 0.1017856384 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
15 Hb_002849_010 0.1031520098 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
16 Hb_014361_140 0.1039052763 - - PREDICTED: peroxidase 51 [Jatropha curcas]
17 Hb_000373_220 0.10518468 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_009083_020 0.1053168437 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
19 Hb_116103_010 0.1097012908 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
20 Hb_064885_010 0.1116007044 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_000628_050 Hb_000628_050 Hb_004241_190 Hb_004241_190 Hb_000628_050--Hb_004241_190 Hb_173029_010 Hb_173029_010 Hb_000628_050--Hb_173029_010 Hb_005773_010 Hb_005773_010 Hb_000628_050--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_000628_050--Hb_000061_060 Hb_000668_220 Hb_000668_220 Hb_000628_050--Hb_000668_220 Hb_053935_010 Hb_053935_010 Hb_000628_050--Hb_053935_010 Hb_004241_190--Hb_053935_010 Hb_004241_190--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_004241_190--Hb_000373_220 Hb_004241_190--Hb_173029_010 Hb_128460_020 Hb_128460_020 Hb_004241_190--Hb_128460_020 Hb_173029_010--Hb_000668_220 Hb_173029_010--Hb_000373_220 Hb_173029_010--Hb_053935_010 Hb_000904_110 Hb_000904_110 Hb_173029_010--Hb_000904_110 Hb_000072_010 Hb_000072_010 Hb_005773_010--Hb_000072_010 Hb_104855_010 Hb_104855_010 Hb_005773_010--Hb_104855_010 Hb_160950_010 Hb_160950_010 Hb_005773_010--Hb_160950_010 Hb_039440_010 Hb_039440_010 Hb_005773_010--Hb_039440_010 Hb_005773_010--Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_000061_060--Hb_014361_140 Hb_000061_060--Hb_128460_020 Hb_000061_060--Hb_053935_010 Hb_000061_060--Hb_104855_010 Hb_158110_010 Hb_158110_010 Hb_000061_060--Hb_158110_010 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_000373_220 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_053935_010--Hb_128460_020 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_014361_140 Hb_053935_010--Hb_158110_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.394181 0.380043 0.507506 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis