Hb_000061_060

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig61: 47560-48927
Sequence    

Annotation

kegg
ID atr:s00029p00050350
description AMTR_s00029p00050350; hypothetical protein
nr
ID NP_851241.1
description transcription factor MYB28 [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID A0A0D2S540
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G186500 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_060 0.0 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
2 Hb_014361_140 0.0295775059 - - PREDICTED: peroxidase 51 [Jatropha curcas]
3 Hb_128460_020 0.0321898865 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
4 Hb_053935_010 0.0404910337 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
5 Hb_004241_190 0.0425545935 - - -
6 Hb_104855_010 0.0614275529 - - -
7 Hb_158110_010 0.066977533 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
8 Hb_000373_220 0.0671283287 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_000628_050 0.0745493746 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_005773_010 0.0835732641 - - -
11 Hb_000668_220 0.0959075684 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
12 Hb_173029_010 0.0962499062 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000769_030 0.0962711056 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000072_010 0.0977869902 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
15 Hb_011671_360 0.0993501013 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
16 Hb_010369_010 0.0995377889 - - conserved hypothetical protein [Ricinus communis]
17 Hb_182625_010 0.1049768842 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
18 Hb_011429_010 0.1209236619 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
19 Hb_004924_020 0.1258654333 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_137349_010 0.1265169003 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_060 Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_000061_060--Hb_014361_140 Hb_128460_020 Hb_128460_020 Hb_000061_060--Hb_128460_020 Hb_053935_010 Hb_053935_010 Hb_000061_060--Hb_053935_010 Hb_004241_190 Hb_004241_190 Hb_000061_060--Hb_004241_190 Hb_104855_010 Hb_104855_010 Hb_000061_060--Hb_104855_010 Hb_158110_010 Hb_158110_010 Hb_000061_060--Hb_158110_010 Hb_014361_140--Hb_128460_020 Hb_014361_140--Hb_053935_010 Hb_014361_140--Hb_104855_010 Hb_014361_140--Hb_158110_010 Hb_014361_140--Hb_004241_190 Hb_128460_020--Hb_053935_010 Hb_000373_220 Hb_000373_220 Hb_128460_020--Hb_000373_220 Hb_128460_020--Hb_004241_190 Hb_128460_020--Hb_158110_010 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_004241_190 Hb_053935_010--Hb_158110_010 Hb_004241_190--Hb_000373_220 Hb_000628_050 Hb_000628_050 Hb_004241_190--Hb_000628_050 Hb_173029_010 Hb_173029_010 Hb_004241_190--Hb_173029_010 Hb_011671_360 Hb_011671_360 Hb_104855_010--Hb_011671_360 Hb_000072_010 Hb_000072_010 Hb_104855_010--Hb_000072_010 Hb_005773_010 Hb_005773_010 Hb_104855_010--Hb_005773_010 Hb_182625_010 Hb_182625_010 Hb_104855_010--Hb_182625_010 Hb_158110_010--Hb_004241_190 Hb_158110_010--Hb_000373_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.207108 0.127434 0.237562 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis