Hb_000072_010

Information

Type -
Description -
Location Contig72: 14087-19117
Sequence    

Annotation

kegg
ID rcu:RCOM_1775060
description xpa-binding protein, putative
nr
ID KJB38226.1
description hypothetical protein B456_006G246700 [Gossypium raimondii]
swissprot
ID Q54C25
description GPN-loop GTPase 1 OS=Dictyostelium discoideum GN=gpn1 PE=3 SV=1
trembl
ID A0A0D2S8X6
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G246700 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gpn-loop gtpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_010 0.0 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
2 Hb_005773_010 0.0316100975 - - -
3 Hb_104855_010 0.0494842557 - - -
4 Hb_011671_360 0.0642014973 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
5 Hb_039440_010 0.0696954174 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005428_010 0.0838188095 - - cytochrome P450, putative [Ricinus communis]
7 Hb_160950_010 0.0903445963 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
8 Hb_003073_060 0.0907931494 - - -
9 Hb_000628_050 0.0928204077 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000061_060 0.0977869902 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
11 Hb_182625_010 0.1002434383 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_185437_010 0.1017482995 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
13 Hb_009083_020 0.1091286312 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
14 Hb_001518_050 0.111568001 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_014361_140 0.1118415848 - - PREDICTED: peroxidase 51 [Jatropha curcas]
16 Hb_004241_190 0.1176991137 - - -
17 Hb_010252_010 0.1193678451 - - -
18 Hb_128460_020 0.1278076573 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
19 Hb_108670_010 0.1318500929 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_000352_020 0.1320345027 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]

Gene co-expression network

sample Hb_000072_010 Hb_000072_010 Hb_005773_010 Hb_005773_010 Hb_000072_010--Hb_005773_010 Hb_104855_010 Hb_104855_010 Hb_000072_010--Hb_104855_010 Hb_011671_360 Hb_011671_360 Hb_000072_010--Hb_011671_360 Hb_039440_010 Hb_039440_010 Hb_000072_010--Hb_039440_010 Hb_005428_010 Hb_005428_010 Hb_000072_010--Hb_005428_010 Hb_160950_010 Hb_160950_010 Hb_000072_010--Hb_160950_010 Hb_005773_010--Hb_104855_010 Hb_000628_050 Hb_000628_050 Hb_005773_010--Hb_000628_050 Hb_005773_010--Hb_160950_010 Hb_005773_010--Hb_039440_010 Hb_000061_060 Hb_000061_060 Hb_005773_010--Hb_000061_060 Hb_104855_010--Hb_011671_360 Hb_104855_010--Hb_000061_060 Hb_182625_010 Hb_182625_010 Hb_104855_010--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_104855_010--Hb_014361_140 Hb_011671_360--Hb_182625_010 Hb_003073_060 Hb_003073_060 Hb_011671_360--Hb_003073_060 Hb_011671_360--Hb_005428_010 Hb_011671_360--Hb_005773_010 Hb_185437_010 Hb_185437_010 Hb_039440_010--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_039440_010--Hb_001518_050 Hb_039440_010--Hb_160950_010 Hb_010252_010 Hb_010252_010 Hb_039440_010--Hb_010252_010 Hb_009083_020 Hb_009083_020 Hb_039440_010--Hb_009083_020 Hb_005428_010--Hb_003073_060 Hb_000352_020 Hb_000352_020 Hb_005428_010--Hb_000352_020 Hb_009838_030 Hb_009838_030 Hb_005428_010--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_005428_010--Hb_001948_100 Hb_160950_010--Hb_009083_020 Hb_160950_010--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_160950_010--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_160950_010--Hb_000248_080 Hb_160950_010--Hb_185437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.535587 0.492335 1.04547 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis