Hb_001518_050

Information

Type transcription factor
Description TF Family: LOB
Location Contig1518: 36734-37258
Sequence    

Annotation

kegg
ID rcu:RCOM_0504000
description LOB domain-containing protein, putative
nr
ID XP_002530717.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID P59468
description LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1
trembl
ID B9SXJ8
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0504000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12910: 37869-38083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_050 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_185437_010 0.0182593472 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
3 Hb_039440_010 0.046213348 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000025_800 0.0477323838 - - hypothetical protein VITISV_020143 [Vitis vinifera]
5 Hb_119583_030 0.0727627922 - - unnamed protein product [Vitis vinifera]
6 Hb_010252_010 0.0738460646 - - -
7 Hb_160950_010 0.0879195756 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
8 Hb_000908_030 0.0890902369 - - small heat-shock protein, putative [Ricinus communis]
9 Hb_003878_130 0.0897569173 - - -
10 Hb_149194_010 0.0905240578 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
11 Hb_002163_070 0.0911329791 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
12 Hb_009083_020 0.0958771668 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_179367_020 0.1013629578 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_005428_010 0.1027286054 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000072_010 0.111568001 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
16 Hb_057721_010 0.1147688215 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_000483_120 0.1172251005 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
18 Hb_177179_020 0.1221721582 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005773_010 0.1236223607 - - -
20 Hb_000352_020 0.1270148665 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]

Gene co-expression network

sample Hb_001518_050 Hb_001518_050 Hb_185437_010 Hb_185437_010 Hb_001518_050--Hb_185437_010 Hb_039440_010 Hb_039440_010 Hb_001518_050--Hb_039440_010 Hb_000025_800 Hb_000025_800 Hb_001518_050--Hb_000025_800 Hb_119583_030 Hb_119583_030 Hb_001518_050--Hb_119583_030 Hb_010252_010 Hb_010252_010 Hb_001518_050--Hb_010252_010 Hb_160950_010 Hb_160950_010 Hb_001518_050--Hb_160950_010 Hb_185437_010--Hb_039440_010 Hb_185437_010--Hb_000025_800 Hb_185437_010--Hb_010252_010 Hb_185437_010--Hb_119583_030 Hb_185437_010--Hb_160950_010 Hb_039440_010--Hb_160950_010 Hb_039440_010--Hb_010252_010 Hb_000072_010 Hb_000072_010 Hb_039440_010--Hb_000072_010 Hb_009083_020 Hb_009083_020 Hb_039440_010--Hb_009083_020 Hb_000025_800--Hb_119583_030 Hb_000025_800--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_000025_800--Hb_002163_070 Hb_057721_010 Hb_057721_010 Hb_000025_800--Hb_057721_010 Hb_119583_030--Hb_057721_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_000483_120 Hb_000483_120 Hb_119583_030--Hb_000483_120 Hb_010252_010--Hb_002163_070 Hb_010252_010--Hb_009083_020 Hb_010252_010--Hb_160950_010 Hb_160950_010--Hb_009083_020 Hb_160950_010--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_160950_010--Hb_000248_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.195346 0.364451 0.713212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis