Hb_057721_010

Information

Type -
Description -
Location Contig57721: 1317-2013
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057721_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_119583_030 0.0421510069 - - unnamed protein product [Vitis vinifera]
3 Hb_137862_020 0.0583826857 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
4 Hb_002163_070 0.0632232802 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
5 Hb_023712_020 0.0670484458 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
6 Hb_177179_020 0.0678039616 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000025_800 0.0687708184 - - hypothetical protein VITISV_020143 [Vitis vinifera]
8 Hb_010252_010 0.0712412116 - - -
9 Hb_000483_120 0.0721007179 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
10 Hb_022465_010 0.088326371 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
11 Hb_009083_020 0.0923357064 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_006197_010 0.0930360726 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
13 Hb_000170_260 0.0976831587 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000248_080 0.1017143202 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_149194_010 0.1050256423 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
16 Hb_160950_010 0.1065729769 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
17 Hb_185437_010 0.10718631 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
18 Hb_001518_050 0.1147688215 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_179367_020 0.1209783606 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_000908_030 0.1221999701 - - small heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_057721_010 Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_057721_010--Hb_119583_030 Hb_137862_020 Hb_137862_020 Hb_057721_010--Hb_137862_020 Hb_002163_070 Hb_002163_070 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_057721_010--Hb_000025_800 Hb_119583_030--Hb_000025_800 Hb_010252_010 Hb_010252_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_185437_010 Hb_185437_010 Hb_119583_030--Hb_185437_010 Hb_000483_120 Hb_000483_120 Hb_119583_030--Hb_000483_120 Hb_137862_020--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_137862_020--Hb_000248_080 Hb_137862_020--Hb_023712_020 Hb_009083_020 Hb_009083_020 Hb_137862_020--Hb_009083_020 Hb_137862_020--Hb_010252_010 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_002163_070--Hb_160950_010 Hb_002163_070--Hb_000248_080 Hb_006197_010 Hb_006197_010 Hb_023712_020--Hb_006197_010 Hb_023712_020--Hb_000248_080 Hb_022465_010 Hb_022465_010 Hb_023712_020--Hb_022465_010 Hb_023712_020--Hb_002163_070 Hb_177179_020--Hb_000483_120 Hb_179367_020 Hb_179367_020 Hb_177179_020--Hb_179367_020 Hb_177179_020--Hb_119583_030 Hb_000908_030 Hb_000908_030 Hb_177179_020--Hb_000908_030 Hb_177179_020--Hb_000025_800 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_000025_800--Hb_010252_010 Hb_000025_800--Hb_002163_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.198458 0.665339 0.739685 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis