Hb_023712_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig23712: 11041-11766
Sequence    

Annotation

kegg
ID rcu:RCOM_1683780
description Dehydration-responsive element-binding protein 1B, putative
nr
ID KDP25513.1
description hypothetical protein JCGZ_20669 [Jatropha curcas]
swissprot
ID Q9CAN9
description Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1
trembl
ID A0A067JRQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20669 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf026-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023712_020 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
2 Hb_137862_020 0.0466354364 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
3 Hb_006197_010 0.0653687906 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
4 Hb_057721_010 0.0670484458 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000248_080 0.0773516916 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_022465_010 0.0777005118 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
7 Hb_002163_070 0.0860449019 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
8 Hb_000170_260 0.0906911679 - - amino acid transporter, putative [Ricinus communis]
9 Hb_019429_020 0.0911553452 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_172983_010 0.0957080736 - - conserved hypothetical protein [Ricinus communis]
11 Hb_136973_020 0.0998162817 - - -
12 Hb_119583_030 0.1013370785 - - unnamed protein product [Vitis vinifera]
13 Hb_001117_020 0.1019453568 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
14 Hb_010252_010 0.1031410817 - - -
15 Hb_009083_020 0.1053799277 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
16 Hb_000277_030 0.1134631735 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_003847_090 0.1149223431 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
18 Hb_001398_110 0.1166984188 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
19 Hb_160950_010 0.1241896 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
20 Hb_005928_010 0.1247405034 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_023712_020 Hb_023712_020 Hb_137862_020 Hb_137862_020 Hb_023712_020--Hb_137862_020 Hb_006197_010 Hb_006197_010 Hb_023712_020--Hb_006197_010 Hb_057721_010 Hb_057721_010 Hb_023712_020--Hb_057721_010 Hb_000248_080 Hb_000248_080 Hb_023712_020--Hb_000248_080 Hb_022465_010 Hb_022465_010 Hb_023712_020--Hb_022465_010 Hb_002163_070 Hb_002163_070 Hb_023712_020--Hb_002163_070 Hb_137862_020--Hb_002163_070 Hb_137862_020--Hb_000248_080 Hb_137862_020--Hb_057721_010 Hb_009083_020 Hb_009083_020 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_006197_010--Hb_022465_010 Hb_006197_010--Hb_137862_020 Hb_006197_010--Hb_057721_010 Hb_000170_260 Hb_000170_260 Hb_006197_010--Hb_000170_260 Hb_019429_020 Hb_019429_020 Hb_006197_010--Hb_019429_020 Hb_119583_030 Hb_119583_030 Hb_057721_010--Hb_119583_030 Hb_057721_010--Hb_002163_070 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_057721_010--Hb_000025_800 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_000248_080--Hb_009083_020 Hb_000248_080--Hb_002163_070 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010 Hb_160950_010 Hb_160950_010 Hb_000248_080--Hb_160950_010 Hb_022465_010--Hb_057721_010 Hb_000654_060 Hb_000654_060 Hb_022465_010--Hb_000654_060 Hb_001398_110 Hb_001398_110 Hb_022465_010--Hb_001398_110 Hb_022465_010--Hb_177179_020 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_009083_020 Hb_002163_070--Hb_160950_010 Hb_002163_070--Hb_119583_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.675319 2.17865 1.77604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis