Hb_177179_020

Information

Type -
Description -
Location Contig177179: 2958-3474
Sequence    

Annotation

kegg
ID rcu:RCOM_1078510
description hypothetical protein
nr
ID XP_002514850.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177179_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000483_120 0.0515300951 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
3 Hb_057721_010 0.0678039616 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_179367_020 0.0695737164 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_119583_030 0.0729219966 - - unnamed protein product [Vitis vinifera]
6 Hb_000908_030 0.0777595632 - - small heat-shock protein, putative [Ricinus communis]
7 Hb_000025_800 0.0800255259 - - hypothetical protein VITISV_020143 [Vitis vinifera]
8 Hb_001152_040 0.0857977098 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
9 Hb_132880_020 0.0997439782 - - hypothetical protein VITISV_026364 [Vitis vinifera]
10 Hb_001976_070 0.1059871169 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
11 Hb_149194_010 0.1074774763 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
12 Hb_022465_010 0.108315181 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
13 Hb_064194_010 0.1162567769 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
14 Hb_000009_100 0.1165241031 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
15 Hb_003489_010 0.117903017 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
16 Hb_010252_010 0.1187885371 - - -
17 Hb_002163_070 0.1192173888 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
18 Hb_001518_050 0.1221721582 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_185437_010 0.1247249867 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
20 Hb_137862_020 0.1254183022 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_177179_020 Hb_177179_020 Hb_000483_120 Hb_000483_120 Hb_177179_020--Hb_000483_120 Hb_057721_010 Hb_057721_010 Hb_177179_020--Hb_057721_010 Hb_179367_020 Hb_179367_020 Hb_177179_020--Hb_179367_020 Hb_119583_030 Hb_119583_030 Hb_177179_020--Hb_119583_030 Hb_000908_030 Hb_000908_030 Hb_177179_020--Hb_000908_030 Hb_000025_800 Hb_000025_800 Hb_177179_020--Hb_000025_800 Hb_000483_120--Hb_057721_010 Hb_000483_120--Hb_119583_030 Hb_000483_120--Hb_000025_800 Hb_000483_120--Hb_179367_020 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010 Hb_057721_010--Hb_119583_030 Hb_137862_020 Hb_137862_020 Hb_057721_010--Hb_137862_020 Hb_002163_070 Hb_002163_070 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_057721_010--Hb_000025_800 Hb_179367_020--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_179367_020--Hb_001976_070 Hb_132880_020 Hb_132880_020 Hb_179367_020--Hb_132880_020 Hb_179367_020--Hb_000025_800 Hb_119583_030--Hb_000025_800 Hb_010252_010 Hb_010252_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_185437_010 Hb_185437_010 Hb_119583_030--Hb_185437_010 Hb_000908_030--Hb_001976_070 Hb_003878_130 Hb_003878_130 Hb_000908_030--Hb_003878_130 Hb_000908_030--Hb_000025_800 Hb_000908_030--Hb_132880_020 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_000025_800--Hb_010252_010 Hb_000025_800--Hb_002163_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904882 0.438409 0.576878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis