Hb_000908_030

Information

Type -
Description -
Location Contig908: 36241-37043
Sequence    

Annotation

kegg
ID rcu:RCOM_0952690
description small heat-shock protein, putative
nr
ID XP_002515848.1
description small heat-shock protein, putative [Ricinus communis]
swissprot
ID D5K211
description Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1
trembl
ID B9RQ29
description Small heat-shock protein, putative OS=Ricinus communis GN=RCOM_0952690 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000908_030 0.0 - - small heat-shock protein, putative [Ricinus communis]
2 Hb_179367_020 0.0146740258 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_001976_070 0.0449613819 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
4 Hb_003878_130 0.0735442224 - - -
5 Hb_177179_020 0.0777595632 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000025_800 0.0782391177 - - hypothetical protein VITISV_020143 [Vitis vinifera]
7 Hb_132880_020 0.086624843 - - hypothetical protein VITISV_026364 [Vitis vinifera]
8 Hb_001518_050 0.0890902369 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_000483_120 0.0901459593 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
10 Hb_119583_030 0.0964475288 - - unnamed protein product [Vitis vinifera]
11 Hb_185437_010 0.1024096172 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
12 Hb_001152_040 0.1030383703 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
13 Hb_149194_010 0.1034394154 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
14 Hb_157881_010 0.1072723462 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000009_100 0.1199604369 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_001006_080 0.1216336216 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
17 Hb_057721_010 0.1221999701 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_004342_040 0.1324385814 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
19 Hb_010252_010 0.1329462921 - - -
20 Hb_000039_080 0.1334665952 - - cyclin d, putative [Ricinus communis]

Gene co-expression network

sample Hb_000908_030 Hb_000908_030 Hb_179367_020 Hb_179367_020 Hb_000908_030--Hb_179367_020 Hb_001976_070 Hb_001976_070 Hb_000908_030--Hb_001976_070 Hb_003878_130 Hb_003878_130 Hb_000908_030--Hb_003878_130 Hb_177179_020 Hb_177179_020 Hb_000908_030--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_000908_030--Hb_000025_800 Hb_132880_020 Hb_132880_020 Hb_000908_030--Hb_132880_020 Hb_179367_020--Hb_001976_070 Hb_179367_020--Hb_177179_020 Hb_179367_020--Hb_132880_020 Hb_179367_020--Hb_000025_800 Hb_000483_120 Hb_000483_120 Hb_179367_020--Hb_000483_120 Hb_001976_070--Hb_132880_020 Hb_157881_010 Hb_157881_010 Hb_001976_070--Hb_157881_010 Hb_001976_070--Hb_003878_130 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_001006_080 Hb_001006_080 Hb_003878_130--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_003878_130--Hb_000696_120 Hb_003878_130--Hb_179367_020 Hb_001518_050 Hb_001518_050 Hb_003878_130--Hb_001518_050 Hb_177179_020--Hb_000483_120 Hb_057721_010 Hb_057721_010 Hb_177179_020--Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_177179_020--Hb_119583_030 Hb_177179_020--Hb_000025_800 Hb_000025_800--Hb_119583_030 Hb_185437_010 Hb_185437_010 Hb_000025_800--Hb_185437_010 Hb_000025_800--Hb_001518_050 Hb_010252_010 Hb_010252_010 Hb_000025_800--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_000025_800--Hb_002163_070 Hb_000025_800--Hb_057721_010 Hb_000009_100 Hb_000009_100 Hb_132880_020--Hb_000009_100 Hb_132880_020--Hb_001152_040 Hb_132880_020--Hb_157881_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105013 0.379465 0.739673 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis