Hb_001006_080

Information

Type -
Description -
Location Contig1006: 99592-113764
Sequence    

Annotation

kegg
ID mus:103975462
description peroxidase P7-like
nr
ID KDP38219.1
description hypothetical protein JCGZ_04862 [Jatropha curcas]
swissprot
ID Q9LE15
description Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=3 SV=1
trembl
ID A0A067L2D5
description Peroxidase OS=Jatropha curcas GN=JCGZ_04862 PE=3 SV=1
Gene Ontology
ID GO:0004601
description lignin-forming anionic peroxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_080 0.0 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
2 Hb_000696_120 0.0382452751 - - PREDICTED: protein FD [Populus euphratica]
3 Hb_003878_130 0.0530843508 - - -
4 Hb_174829_030 0.0537604646 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010080_040 0.0606014028 - - conserved hypothetical protein [Ricinus communis]
6 Hb_151027_010 0.0728512853 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
7 Hb_104362_020 0.0736964822 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_003216_010 0.0778225522 - - glycosyl hydrolase family protein [Populus trichocarpa]
9 Hb_004342_040 0.0884716385 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
10 Hb_005057_020 0.0888255255 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
11 Hb_179367_010 0.0920547401 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_004899_380 0.094272774 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000352_020 0.1016845637 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
14 Hb_003540_010 0.1035750186 - - -
15 Hb_000174_130 0.1064864207 - - flowering locus T-like protein [Fagus crenata]
16 Hb_157881_010 0.1090810927 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000917_220 0.110406765 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
18 Hb_002014_120 0.1125803559 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
19 Hb_001976_070 0.1137830386 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
20 Hb_166700_010 0.1156274347 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_001006_080 Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_001006_080--Hb_000696_120 Hb_003878_130 Hb_003878_130 Hb_001006_080--Hb_003878_130 Hb_174829_030 Hb_174829_030 Hb_001006_080--Hb_174829_030 Hb_010080_040 Hb_010080_040 Hb_001006_080--Hb_010080_040 Hb_151027_010 Hb_151027_010 Hb_001006_080--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_001006_080--Hb_104362_020 Hb_000696_120--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000696_120--Hb_003216_010 Hb_000696_120--Hb_010080_040 Hb_005057_020 Hb_005057_020 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_000908_030 Hb_000908_030 Hb_003878_130--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_003878_130--Hb_001976_070 Hb_003878_130--Hb_000696_120 Hb_179367_020 Hb_179367_020 Hb_003878_130--Hb_179367_020 Hb_001518_050 Hb_001518_050 Hb_003878_130--Hb_001518_050 Hb_174829_030--Hb_003216_010 Hb_174829_030--Hb_151027_010 Hb_174829_030--Hb_010080_040 Hb_003540_010 Hb_003540_010 Hb_174829_030--Hb_003540_010 Hb_010080_040--Hb_003216_010 Hb_003561_020 Hb_003561_020 Hb_010080_040--Hb_003561_020 Hb_010080_040--Hb_005057_020 Hb_151027_010--Hb_104362_020 Hb_000174_130 Hb_000174_130 Hb_151027_010--Hb_000174_130 Hb_179367_010 Hb_179367_010 Hb_151027_010--Hb_179367_010 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_004652_040 Hb_004652_040 Hb_151027_010--Hb_004652_040 Hb_104362_020--Hb_179367_010 Hb_104362_020--Hb_000174_130 Hb_002014_120 Hb_002014_120 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_104362_020--Hb_103000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0126965 0.0240899 0.0921858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis