Hb_179367_020

Information

Type -
Description -
Location Contig179367: 5223-5945
Sequence    

Annotation

kegg
ID rcu:RCOM_1609080
description hypothetical protein
nr
ID XP_012083829.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067K8H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14346 PE=4 SV=1
Gene Ontology
ID GO:0016616
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179367_020 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_000908_030 0.0146740258 - - small heat-shock protein, putative [Ricinus communis]
3 Hb_001976_070 0.0411681541 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
4 Hb_177179_020 0.0695737164 - - conserved hypothetical protein [Ricinus communis]
5 Hb_132880_020 0.0735400424 - - hypothetical protein VITISV_026364 [Vitis vinifera]
6 Hb_000025_800 0.085007437 - - hypothetical protein VITISV_020143 [Vitis vinifera]
7 Hb_000483_120 0.0860563765 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
8 Hb_003878_130 0.086329515 - - -
9 Hb_001152_040 0.0885796799 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
10 Hb_119583_030 0.0998490105 - - unnamed protein product [Vitis vinifera]
11 Hb_001518_050 0.1013629578 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_157881_010 0.1053505715 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000009_100 0.1063922141 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
14 Hb_149194_010 0.1081407774 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
15 Hb_185437_010 0.1135521492 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
16 Hb_057721_010 0.1209783606 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_000039_080 0.1308718187 - - cyclin d, putative [Ricinus communis]
18 Hb_001006_080 0.1323186609 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
19 Hb_089040_010 0.1332799283 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
20 Hb_064194_010 0.1341352073 - - PREDICTED: endoglucanase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_179367_020 Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_179367_020--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_179367_020--Hb_001976_070 Hb_177179_020 Hb_177179_020 Hb_179367_020--Hb_177179_020 Hb_132880_020 Hb_132880_020 Hb_179367_020--Hb_132880_020 Hb_000025_800 Hb_000025_800 Hb_179367_020--Hb_000025_800 Hb_000483_120 Hb_000483_120 Hb_179367_020--Hb_000483_120 Hb_000908_030--Hb_001976_070 Hb_003878_130 Hb_003878_130 Hb_000908_030--Hb_003878_130 Hb_000908_030--Hb_177179_020 Hb_000908_030--Hb_000025_800 Hb_000908_030--Hb_132880_020 Hb_001976_070--Hb_132880_020 Hb_157881_010 Hb_157881_010 Hb_001976_070--Hb_157881_010 Hb_001976_070--Hb_003878_130 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_177179_020--Hb_000483_120 Hb_057721_010 Hb_057721_010 Hb_177179_020--Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_177179_020--Hb_119583_030 Hb_177179_020--Hb_000025_800 Hb_000009_100 Hb_000009_100 Hb_132880_020--Hb_000009_100 Hb_132880_020--Hb_001152_040 Hb_132880_020--Hb_157881_010 Hb_000025_800--Hb_119583_030 Hb_185437_010 Hb_185437_010 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_010252_010 Hb_010252_010 Hb_000025_800--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_000025_800--Hb_002163_070 Hb_000025_800--Hb_057721_010 Hb_000483_120--Hb_057721_010 Hb_000483_120--Hb_119583_030 Hb_000483_120--Hb_000025_800 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0564196 0.232625 0.434195 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis