Hb_003489_010

Information

Type -
Description -
Location Contig3489: 6820-7749
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003489_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_036602_010 0.0782752647 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
3 Hb_000483_120 0.0873354181 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
4 Hb_014549_010 0.1080201313 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
5 Hb_000270_050 0.1161799601 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
6 Hb_000289_020 0.117433023 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
7 Hb_177179_020 0.117903017 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000933_040 0.1194786416 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_057721_010 0.1279337583 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_119583_030 0.1287821251 - - unnamed protein product [Vitis vinifera]
11 Hb_001329_050 0.1298153231 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000025_800 0.1328723545 - - hypothetical protein VITISV_020143 [Vitis vinifera]
13 Hb_000170_260 0.1351260004 - - amino acid transporter, putative [Ricinus communis]
14 Hb_001032_080 0.1355165877 - - Ankyrin repeat protein [Medicago truncatula]
15 Hb_005701_100 0.1365276849 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
16 Hb_149194_010 0.1366210986 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
17 Hb_179367_020 0.1372152526 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_006197_010 0.1377768039 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
19 Hb_011826_010 0.1390212474 - - Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_000908_030 0.1399343646 - - small heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003489_010 Hb_003489_010 Hb_036602_010 Hb_036602_010 Hb_003489_010--Hb_036602_010 Hb_000483_120 Hb_000483_120 Hb_003489_010--Hb_000483_120 Hb_014549_010 Hb_014549_010 Hb_003489_010--Hb_014549_010 Hb_000270_050 Hb_000270_050 Hb_003489_010--Hb_000270_050 Hb_000289_020 Hb_000289_020 Hb_003489_010--Hb_000289_020 Hb_177179_020 Hb_177179_020 Hb_003489_010--Hb_177179_020 Hb_036602_010--Hb_014549_010 Hb_036602_010--Hb_000483_120 Hb_005701_100 Hb_005701_100 Hb_036602_010--Hb_005701_100 Hb_004154_010 Hb_004154_010 Hb_036602_010--Hb_004154_010 Hb_006197_010 Hb_006197_010 Hb_036602_010--Hb_006197_010 Hb_000483_120--Hb_177179_020 Hb_057721_010 Hb_057721_010 Hb_000483_120--Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_000483_120--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_000483_120--Hb_000025_800 Hb_179367_020 Hb_179367_020 Hb_000483_120--Hb_179367_020 Hb_014549_010--Hb_004154_010 Hb_014549_010--Hb_005701_100 Hb_185830_090 Hb_185830_090 Hb_014549_010--Hb_185830_090 Hb_006721_060 Hb_006721_060 Hb_014549_010--Hb_006721_060 Hb_000270_050--Hb_000289_020 Hb_001205_290 Hb_001205_290 Hb_000270_050--Hb_001205_290 Hb_004732_070 Hb_004732_070 Hb_000270_050--Hb_004732_070 Hb_002307_150 Hb_002307_150 Hb_000270_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_000270_050--Hb_005211_170 Hb_006120_130 Hb_006120_130 Hb_000289_020--Hb_006120_130 Hb_002028_270 Hb_002028_270 Hb_000289_020--Hb_002028_270 Hb_000098_270 Hb_000098_270 Hb_000289_020--Hb_000098_270 Hb_000289_020--Hb_005211_170 Hb_043552_010 Hb_043552_010 Hb_000289_020--Hb_043552_010 Hb_003464_010 Hb_003464_010 Hb_000289_020--Hb_003464_010 Hb_177179_020--Hb_057721_010 Hb_177179_020--Hb_179367_020 Hb_177179_020--Hb_119583_030 Hb_000908_030 Hb_000908_030 Hb_177179_020--Hb_000908_030 Hb_177179_020--Hb_000025_800
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.17 4.8794 6.42729 0 0.0274411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.228676 0.0888287

CAGE analysis