Hb_006197_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig6197: 14746-16050
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14130g
description POPTRDRAFT_574574; hypothetical protein
nr
ID XP_012087685.1
description PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JXL7
description MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006197_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
2 Hb_023712_020 0.0653687906 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
3 Hb_022465_010 0.0838202296 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
4 Hb_137862_020 0.0901417483 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
5 Hb_057721_010 0.0930360726 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_000170_260 0.1068189184 - - amino acid transporter, putative [Ricinus communis]
7 Hb_019429_020 0.1100892816 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001117_020 0.1158153742 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
9 Hb_000483_120 0.1164210441 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
10 Hb_000248_080 0.1164279029 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_002163_070 0.1194667386 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
12 Hb_001398_110 0.1207752675 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
13 Hb_036602_010 0.1211647797 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
14 Hb_000331_020 0.1214248289 - - cytochrome P450, putative [Ricinus communis]
15 Hb_172983_010 0.1242334868 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004586_050 0.1247881921 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
17 Hb_119583_030 0.1250749147 - - unnamed protein product [Vitis vinifera]
18 Hb_005599_010 0.1251375824 - - Protein MLO, putative [Ricinus communis]
19 Hb_004154_010 0.1254606637 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
20 Hb_002540_100 0.1279092218 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_006197_010 Hb_006197_010 Hb_023712_020 Hb_023712_020 Hb_006197_010--Hb_023712_020 Hb_022465_010 Hb_022465_010 Hb_006197_010--Hb_022465_010 Hb_137862_020 Hb_137862_020 Hb_006197_010--Hb_137862_020 Hb_057721_010 Hb_057721_010 Hb_006197_010--Hb_057721_010 Hb_000170_260 Hb_000170_260 Hb_006197_010--Hb_000170_260 Hb_019429_020 Hb_019429_020 Hb_006197_010--Hb_019429_020 Hb_023712_020--Hb_137862_020 Hb_023712_020--Hb_057721_010 Hb_000248_080 Hb_000248_080 Hb_023712_020--Hb_000248_080 Hb_023712_020--Hb_022465_010 Hb_002163_070 Hb_002163_070 Hb_023712_020--Hb_002163_070 Hb_022465_010--Hb_057721_010 Hb_000654_060 Hb_000654_060 Hb_022465_010--Hb_000654_060 Hb_001398_110 Hb_001398_110 Hb_022465_010--Hb_001398_110 Hb_177179_020 Hb_177179_020 Hb_022465_010--Hb_177179_020 Hb_137862_020--Hb_002163_070 Hb_137862_020--Hb_000248_080 Hb_137862_020--Hb_057721_010 Hb_009083_020 Hb_009083_020 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_119583_030 Hb_119583_030 Hb_057721_010--Hb_119583_030 Hb_057721_010--Hb_002163_070 Hb_057721_010--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_057721_010--Hb_000025_800 Hb_001032_080 Hb_001032_080 Hb_000170_260--Hb_001032_080 Hb_000170_260--Hb_137862_020 Hb_004314_020 Hb_004314_020 Hb_000170_260--Hb_004314_020 Hb_000170_260--Hb_023712_020 Hb_000170_260--Hb_057721_010 Hb_000170_260--Hb_002163_070 Hb_001117_020 Hb_001117_020 Hb_019429_020--Hb_001117_020 Hb_008821_030 Hb_008821_030 Hb_019429_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_019429_020--Hb_004788_030 Hb_019429_020--Hb_001398_110 Hb_000045_290 Hb_000045_290 Hb_019429_020--Hb_000045_290 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.786477 2.96695 2.32267 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0464302 0

CAGE analysis