Hb_009083_020

Information

Type -
Description -
Location Contig9083: 16959-19274
Sequence    

Annotation

kegg
ID rcu:RCOM_1598220
description Zeamatin precursor, putative
nr
ID XP_012073783.1
description PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
swissprot
ID O80327
description Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1
trembl
ID A0A067KXA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08201 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_020 0.0 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
2 Hb_160950_010 0.018990972 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
3 Hb_002163_070 0.0293248235 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
4 Hb_010252_010 0.0303780635 - - -
5 Hb_000248_080 0.0537375067 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_137862_020 0.0588866356 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
7 Hb_039440_010 0.0705117471 - - conserved hypothetical protein [Ricinus communis]
8 Hb_136973_020 0.0750294068 - - -
9 Hb_119583_030 0.0758164201 - - unnamed protein product [Vitis vinifera]
10 Hb_185437_010 0.0780040545 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
11 Hb_000025_800 0.0850889681 - - hypothetical protein VITISV_020143 [Vitis vinifera]
12 Hb_057721_010 0.0923357064 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_005773_010 0.0940553556 - - -
14 Hb_001518_050 0.0958771668 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_000628_050 0.1053168437 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_023712_020 0.1053799277 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
17 Hb_005928_010 0.1064876055 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
18 Hb_000072_010 0.1091286312 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
19 Hb_000170_260 0.1106583888 - - amino acid transporter, putative [Ricinus communis]
20 Hb_002849_010 0.1127031653 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]

Gene co-expression network

sample Hb_009083_020 Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_009083_020--Hb_160950_010 Hb_002163_070 Hb_002163_070 Hb_009083_020--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_009083_020--Hb_010252_010 Hb_000248_080 Hb_000248_080 Hb_009083_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_009083_020--Hb_137862_020 Hb_039440_010 Hb_039440_010 Hb_009083_020--Hb_039440_010 Hb_160950_010--Hb_010252_010 Hb_160950_010--Hb_002163_070 Hb_160950_010--Hb_039440_010 Hb_160950_010--Hb_000248_080 Hb_185437_010 Hb_185437_010 Hb_160950_010--Hb_185437_010 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_137862_020 Hb_119583_030 Hb_119583_030 Hb_002163_070--Hb_119583_030 Hb_002163_070--Hb_000248_080 Hb_010252_010--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_010252_010--Hb_000025_800 Hb_010252_010--Hb_185437_010 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_000248_080--Hb_137862_020 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010 Hb_023712_020 Hb_023712_020 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_137862_020--Hb_010252_010 Hb_039440_010--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_039440_010--Hb_001518_050 Hb_039440_010--Hb_010252_010 Hb_000072_010 Hb_000072_010 Hb_039440_010--Hb_000072_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.15993 0.280918 0.35771 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis