Hb_000025_800

Information

Type -
Description -
Location Contig25: 731453-734458
Sequence    

Annotation

kegg
ID vvi:100265904
description putative receptor-like protein kinase At3g47110
nr
ID CAN63094.1
description hypothetical protein VITISV_020143 [Vitis vinifera]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A5B301
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020143 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_800 0.0 - - hypothetical protein VITISV_020143 [Vitis vinifera]
2 Hb_119583_030 0.0275981278 - - unnamed protein product [Vitis vinifera]
3 Hb_185437_010 0.0456924749 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
4 Hb_001518_050 0.0477323838 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_010252_010 0.0551430106 - - -
6 Hb_002163_070 0.0663679062 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
7 Hb_057721_010 0.0687708184 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_039440_010 0.0753146277 - - conserved hypothetical protein [Ricinus communis]
9 Hb_149194_010 0.0770484708 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
10 Hb_000908_030 0.0782391177 - - small heat-shock protein, putative [Ricinus communis]
11 Hb_000483_120 0.0790884561 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
12 Hb_177179_020 0.0800255259 - - conserved hypothetical protein [Ricinus communis]
13 Hb_179367_020 0.085007437 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_009083_020 0.0850889681 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
15 Hb_160950_010 0.0870678825 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
16 Hb_137862_020 0.0975172794 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
17 Hb_003878_130 0.1148662959 - - -
18 Hb_001976_070 0.122757914 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
19 Hb_000248_080 0.126058795 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_011826_010 0.1267939413 - - Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_800 Hb_000025_800 Hb_119583_030 Hb_119583_030 Hb_000025_800--Hb_119583_030 Hb_185437_010 Hb_185437_010 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_010252_010 Hb_010252_010 Hb_000025_800--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_000025_800--Hb_002163_070 Hb_057721_010 Hb_057721_010 Hb_000025_800--Hb_057721_010 Hb_119583_030--Hb_057721_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_119583_030--Hb_185437_010 Hb_000483_120 Hb_000483_120 Hb_119583_030--Hb_000483_120 Hb_185437_010--Hb_001518_050 Hb_039440_010 Hb_039440_010 Hb_185437_010--Hb_039440_010 Hb_185437_010--Hb_010252_010 Hb_160950_010 Hb_160950_010 Hb_185437_010--Hb_160950_010 Hb_001518_050--Hb_039440_010 Hb_001518_050--Hb_119583_030 Hb_001518_050--Hb_010252_010 Hb_001518_050--Hb_160950_010 Hb_010252_010--Hb_002163_070 Hb_009083_020 Hb_009083_020 Hb_010252_010--Hb_009083_020 Hb_010252_010--Hb_160950_010 Hb_002163_070--Hb_009083_020 Hb_137862_020 Hb_137862_020 Hb_002163_070--Hb_137862_020 Hb_002163_070--Hb_160950_010 Hb_000248_080 Hb_000248_080 Hb_002163_070--Hb_000248_080 Hb_057721_010--Hb_137862_020 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.02327 0.0583744 0.0915741 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis