Hb_000483_120

Information

Type transcription factor
Description TF Family: MYB
Location Contig483: 111682-113396
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12530g
description POPTRDRAFT_556366; hypothetical protein
nr
ID XP_002306049.2
description hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID B9H0F8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s12530g PE=4 SV=2
Gene Ontology
ID GO:0005634
description myb-related protein 306-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_120 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
2 Hb_177179_020 0.0515300951 - - conserved hypothetical protein [Ricinus communis]
3 Hb_057721_010 0.0721007179 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_119583_030 0.0725775876 - - unnamed protein product [Vitis vinifera]
5 Hb_000025_800 0.0790884561 - - hypothetical protein VITISV_020143 [Vitis vinifera]
6 Hb_179367_020 0.0860563765 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_003489_010 0.0873354181 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_000908_030 0.0901459593 - - small heat-shock protein, putative [Ricinus communis]
9 Hb_036602_010 0.0904295751 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
10 Hb_149194_010 0.1079133471 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
11 Hb_010252_010 0.1113275413 - - -
12 Hb_002163_070 0.1121278178 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
13 Hb_001152_040 0.1133925917 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
14 Hb_006197_010 0.1164210441 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
15 Hb_001518_050 0.1172251005 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_185437_010 0.1182658453 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
17 Hb_011826_010 0.1197410236 - - Disease resistance protein RPM1, putative [Ricinus communis]
18 Hb_022465_010 0.1198089955 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
19 Hb_137862_020 0.1201739704 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
20 Hb_001976_070 0.1208501376 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]

Gene co-expression network

sample Hb_000483_120 Hb_000483_120 Hb_177179_020 Hb_177179_020 Hb_000483_120--Hb_177179_020 Hb_057721_010 Hb_057721_010 Hb_000483_120--Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_000483_120--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_000483_120--Hb_000025_800 Hb_179367_020 Hb_179367_020 Hb_000483_120--Hb_179367_020 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010 Hb_177179_020--Hb_057721_010 Hb_177179_020--Hb_179367_020 Hb_177179_020--Hb_119583_030 Hb_000908_030 Hb_000908_030 Hb_177179_020--Hb_000908_030 Hb_177179_020--Hb_000025_800 Hb_057721_010--Hb_119583_030 Hb_137862_020 Hb_137862_020 Hb_057721_010--Hb_137862_020 Hb_002163_070 Hb_002163_070 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_057721_010--Hb_000025_800 Hb_119583_030--Hb_000025_800 Hb_010252_010 Hb_010252_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_185437_010 Hb_185437_010 Hb_119583_030--Hb_185437_010 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_000025_800--Hb_010252_010 Hb_000025_800--Hb_002163_070 Hb_179367_020--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_179367_020--Hb_001976_070 Hb_132880_020 Hb_132880_020 Hb_179367_020--Hb_132880_020 Hb_179367_020--Hb_000025_800 Hb_036602_010 Hb_036602_010 Hb_003489_010--Hb_036602_010 Hb_014549_010 Hb_014549_010 Hb_003489_010--Hb_014549_010 Hb_000270_050 Hb_000270_050 Hb_003489_010--Hb_000270_050 Hb_000289_020 Hb_000289_020 Hb_003489_010--Hb_000289_020 Hb_003489_010--Hb_177179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.307318 1.26958 1.68681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0151262 0

CAGE analysis