Hb_132880_020

Information

Type -
Description -
Location Contig132880: 8061-8303
Sequence    

Annotation

kegg
ID tcc:TCM_012147
description Galactose-1-phosphate uridylyltransferase, putative
nr
ID CAN67385.1
description hypothetical protein VITISV_026364 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1A6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026364 PE=4 SV=1
Gene Ontology
ID GO:0016779
description hypothetical protein VITISV_026364

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132880_020 0.0 - - hypothetical protein VITISV_026364 [Vitis vinifera]
2 Hb_000009_100 0.0359551788 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
3 Hb_001152_040 0.0366873526 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
4 Hb_001976_070 0.061829214 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
5 Hb_179367_020 0.0735400424 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000908_030 0.086624843 - - small heat-shock protein, putative [Ricinus communis]
7 Hb_157881_010 0.0914125495 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_064194_010 0.0964608065 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
9 Hb_177179_020 0.0997439782 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013394_110 0.1076038861 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001488_120 0.1077630066 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
12 Hb_000483_120 0.1231536097 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
13 Hb_089040_010 0.1313105708 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
14 Hb_135592_010 0.1321981933 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004342_040 0.1324995512 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
16 Hb_087717_010 0.1356224688 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
17 Hb_000245_010 0.1391756418 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
18 Hb_005858_010 0.1392028556 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
19 Hb_012758_020 0.1392683799 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_001414_070 0.139379301 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_132880_020 Hb_132880_020 Hb_000009_100 Hb_000009_100 Hb_132880_020--Hb_000009_100 Hb_001152_040 Hb_001152_040 Hb_132880_020--Hb_001152_040 Hb_001976_070 Hb_001976_070 Hb_132880_020--Hb_001976_070 Hb_179367_020 Hb_179367_020 Hb_132880_020--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_132880_020--Hb_000908_030 Hb_157881_010 Hb_157881_010 Hb_132880_020--Hb_157881_010 Hb_000009_100--Hb_001152_040 Hb_013394_110 Hb_013394_110 Hb_000009_100--Hb_013394_110 Hb_064194_010 Hb_064194_010 Hb_000009_100--Hb_064194_010 Hb_000009_100--Hb_001976_070 Hb_001488_120 Hb_001488_120 Hb_000009_100--Hb_001488_120 Hb_001152_040--Hb_064194_010 Hb_177179_020 Hb_177179_020 Hb_001152_040--Hb_177179_020 Hb_001152_040--Hb_179367_020 Hb_001152_040--Hb_001976_070 Hb_001976_070--Hb_179367_020 Hb_001976_070--Hb_000908_030 Hb_001976_070--Hb_157881_010 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130 Hb_179367_020--Hb_000908_030 Hb_179367_020--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_179367_020--Hb_000025_800 Hb_000483_120 Hb_000483_120 Hb_179367_020--Hb_000483_120 Hb_000908_030--Hb_003878_130 Hb_000908_030--Hb_177179_020 Hb_000908_030--Hb_000025_800 Hb_004342_040 Hb_004342_040 Hb_157881_010--Hb_004342_040 Hb_061335_010 Hb_061335_010 Hb_157881_010--Hb_061335_010 Hb_005057_020 Hb_005057_020 Hb_157881_010--Hb_005057_020 Hb_000696_120 Hb_000696_120 Hb_157881_010--Hb_000696_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421106 3.81106 6.79466 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis