Hb_061335_010

Information

Type -
Description -
Location Contig61335: 190-2238
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17300g
description POPTRDRAFT_648723; hypothetical protein
nr
ID XP_002306157.1
description hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
swissprot
ID Q9FJG0
description Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1
trembl
ID B9H127
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061335_010 0.0 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
2 Hb_122079_010 0.0478780319 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
3 Hb_004342_040 0.0530554931 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
4 Hb_005057_020 0.0614713421 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
5 Hb_157881_010 0.0682632464 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000053_150 0.0711065752 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
7 Hb_010812_080 0.0719608541 - - PREDICTED: methylesterase 17 [Jatropha curcas]
8 Hb_002534_140 0.0884752279 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
9 Hb_178968_010 0.0910258127 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
10 Hb_003216_010 0.0965062364 - - glycosyl hydrolase family protein [Populus trichocarpa]
11 Hb_000896_030 0.1061687827 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001136_150 0.1089498608 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000130_430 0.1089594417 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
14 Hb_001248_160 0.1089733431 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
15 Hb_163180_010 0.1091328926 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_000330_010 0.1091525351 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
17 Hb_086639_110 0.1091620304 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
18 Hb_000696_120 0.1091953472 - - PREDICTED: protein FD [Populus euphratica]
19 Hb_001926_060 0.1092028359 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
20 Hb_007058_020 0.1092740675 - - -

Gene co-expression network

sample Hb_061335_010 Hb_061335_010 Hb_122079_010 Hb_122079_010 Hb_061335_010--Hb_122079_010 Hb_004342_040 Hb_004342_040 Hb_061335_010--Hb_004342_040 Hb_005057_020 Hb_005057_020 Hb_061335_010--Hb_005057_020 Hb_157881_010 Hb_157881_010 Hb_061335_010--Hb_157881_010 Hb_000053_150 Hb_000053_150 Hb_061335_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_061335_010--Hb_010812_080 Hb_122079_010--Hb_000053_150 Hb_122079_010--Hb_010812_080 Hb_178968_010 Hb_178968_010 Hb_122079_010--Hb_178968_010 Hb_122079_010--Hb_005057_020 Hb_000277_040 Hb_000277_040 Hb_122079_010--Hb_000277_040 Hb_004342_040--Hb_005057_020 Hb_004342_040--Hb_157881_010 Hb_000696_120 Hb_000696_120 Hb_004342_040--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_004342_040--Hb_003216_010 Hb_004342_040--Hb_122079_010 Hb_005057_020--Hb_003216_010 Hb_005057_020--Hb_000053_150 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_178968_010 Hb_001976_070 Hb_001976_070 Hb_157881_010--Hb_001976_070 Hb_157881_010--Hb_005057_020 Hb_132880_020 Hb_132880_020 Hb_157881_010--Hb_132880_020 Hb_157881_010--Hb_000696_120 Hb_000053_150--Hb_178968_010 Hb_018671_010 Hb_018671_010 Hb_000053_150--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000053_150--Hb_002186_120 Hb_000053_150--Hb_010812_080 Hb_012545_020 Hb_012545_020 Hb_010812_080--Hb_012545_020 Hb_010812_080--Hb_000277_040 Hb_000099_110 Hb_000099_110 Hb_010812_080--Hb_000099_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0374465 0.317122 1.23649 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis