Hb_000053_150

Information

Type -
Description -
Location Contig53: 242300-242659
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14050g
description POPTRDRAFT_566680; clavata3/esr-related 12 family protein
nr
ID XP_002314887.1
description clavata3/esr-related 12 family protein [Populus trichocarpa]
swissprot
ID Q6NMF0
description CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1
trembl
ID B9HWM5
description Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0010s14050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_150 0.0 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
2 Hb_178968_010 0.0250980633 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
3 Hb_122079_010 0.0259207877 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
4 Hb_005057_020 0.0525328804 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
5 Hb_018671_010 0.0573954054 - - -
6 Hb_002186_120 0.0583817966 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
7 Hb_010812_080 0.0602956303 - - PREDICTED: methylesterase 17 [Jatropha curcas]
8 Hb_000277_040 0.0612123271 - - -
9 Hb_003216_010 0.0621872845 - - glycosyl hydrolase family protein [Populus trichocarpa]
10 Hb_003540_010 0.0692006187 - - -
11 Hb_061335_010 0.0711065752 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
12 Hb_004137_090 0.076016353 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
13 Hb_004342_040 0.0848387083 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
14 Hb_000224_050 0.0869145823 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012545_020 0.0912776176 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
16 Hb_000917_220 0.094305009 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
17 Hb_000099_110 0.0955357608 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_000696_120 0.0978340716 - - PREDICTED: protein FD [Populus euphratica]
19 Hb_007290_010 0.0986456511 - - cytochrome P450, putative [Ricinus communis]
20 Hb_003561_020 0.1005130716 - - gulonolactone oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000053_150 Hb_000053_150 Hb_178968_010 Hb_178968_010 Hb_000053_150--Hb_178968_010 Hb_122079_010 Hb_122079_010 Hb_000053_150--Hb_122079_010 Hb_005057_020 Hb_005057_020 Hb_000053_150--Hb_005057_020 Hb_018671_010 Hb_018671_010 Hb_000053_150--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000053_150--Hb_002186_120 Hb_010812_080 Hb_010812_080 Hb_000053_150--Hb_010812_080 Hb_003540_010 Hb_003540_010 Hb_178968_010--Hb_003540_010 Hb_178968_010--Hb_018671_010 Hb_003216_010 Hb_003216_010 Hb_178968_010--Hb_003216_010 Hb_178968_010--Hb_122079_010 Hb_178968_010--Hb_002186_120 Hb_122079_010--Hb_010812_080 Hb_061335_010 Hb_061335_010 Hb_122079_010--Hb_061335_010 Hb_122079_010--Hb_005057_020 Hb_000277_040 Hb_000277_040 Hb_122079_010--Hb_000277_040 Hb_005057_020--Hb_003216_010 Hb_004342_040 Hb_004342_040 Hb_005057_020--Hb_004342_040 Hb_000696_120 Hb_000696_120 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_178968_010 Hb_018671_010--Hb_002186_120 Hb_018671_010--Hb_000277_040 Hb_018671_010--Hb_003540_010 Hb_000224_050 Hb_000224_050 Hb_018671_010--Hb_000224_050 Hb_002186_120--Hb_000277_040 Hb_002186_120--Hb_000224_050 Hb_002186_120--Hb_003540_010 Hb_012545_020 Hb_012545_020 Hb_010812_080--Hb_012545_020 Hb_010812_080--Hb_000277_040 Hb_000099_110 Hb_000099_110 Hb_010812_080--Hb_000099_110 Hb_010812_080--Hb_061335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224159 0.96245 5.75656 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis